| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0604 |
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| Symbol | |
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| ID | 5109566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 665471 |
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| End bp | 667369 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640501815 |
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| Product | DNA topoisomerase IV subunit B |
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| Protein accession | YP_001186104 |
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| Protein GI | 146305639 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCAGC AGAACGCCTA CAACGCCGAT GCCATTGAAG TCCTTTCCGG CCTCGACCCG
GTGCGCAAAC GCCCGGGCAT GTACACCGAC ACCACCCGCC CCAACCACCT GGCTCAGGAA
GTCATCGACA ACAGCGTCGA CGAGGCGCTG GCCGGGCATG CCAAGTCGAT CCAGGTGATC
CTGCACGAGG ACAACTCGCT GGAGGTGATC GACGACGGCC GCGGCATGCC GGTGGATATC
CACCCCGAAG AAGGCGTGCC GGGTGTGGAA CTGATCCTCA CCAAGCTGCA TGCCGGCGGC
AAGTTCAGCA ACAAGAACTA CCAGTTCTCC GGCGGTCTGC ACGGCGTCGG CATCAGCGTG
GTCAACGCCC TGTCGACCCG CGTGGTGGTT ACCGTCAAGC GTGACGGCAA CGAGTACCAG
ATGAGCTTCG CCGACGGGTT CAAGGCCAGC GAGCTGGAAG TGATCGGCAC GGTGGGCAAG
CGCAATACCG GCACCAGCGT GCACTTCTGG CCCGACGCCA AGTACTTCGA CTCCTTCAAG
TTTTCGGTCA GCCGCCTCAA GCACGTGCTC AAGGCCAAGG CCGTGCTGTG CCCGGGCCTG
AGCGTCACCT TCGAGGACAA GGCCGCCGGC GAGAAGGTCG AATGGCATTA CGAGGACGGC
CTGCGTTCCT ACCTGGTCGA TGCCGTCAGC GAGTTCGAGC GCCTGCCCGC CGAGCCCTTC
GTCGGCAGCC TGGCCGGCAA CAAGGAGGCG GTGGACTGGG CCCTGCTGTG GCTGCCCGAA
GGCGGCGATG CGGTGCAGGA GAGCTACGTC AACCTGATCC CCACCGCCCA GGGCGGCACC
CACGTCAACG GCCTGCGCCA GGGCCTGCTC GATGCCATGC GCGAGTTCTG CGAGTTCCGC
AACCTGCTGC CGCGCGGCGT GAAGCTGGCC CCGGAAGACG TCTGGGAGCG CATCGCCTTC
GTCCTTTCGA TGAAGATGCA GGACGCCCAG TTCTCTGGGC AGACCAAGGA GCGCCTGTCC
TCGCGCGAGG CGGCCGCCTT CGTCTCCGGA GTCGTTAAAG ACGCCTTCAG CCTGTGGCTC
AACGCCCACC CGGAAACCGG CCTGGCCCTG GCCGAGCTGG CCATCAGCAA CGCCGGCCGC
CGTCTCAAGG CGGGCAAGAA GGTCGAGCGC AAGAAGATCA CCCAGGGCCC GGCGCTGCCC
GGCAAGTTGG CCGACTGCGC GGGGCAGAAC CCGCTGCGCT GCGAGCTGTT CCTGGTCGAG
GGCGACTCGG CCGGCGGCAG CGCCAAGCAG GCGCGCGACA AGGAGTTCCA GGCCATCATG
CCGCTACGCG GCAAGATCCT GAACACCTGG GAAGTCGACG GCAGCGAGGT ACTGGCCTCG
CAAGAGGTGC ACGACATCGC CGTGGCCATC GGCATCGACC CCGGCTCCAG CGATCTCTCC
GGGCTGCGCT ACGGCAAGAT CTGCATCCTC GCCGACGCCG ACTCCGACGG CCTGCACATC
GCCACCCTGC TCTGCGCCCT GTTCGTCCGC CACTTCCGCC CGCTGGTGGA TGCCGGCCAC
GTCTACGTGG CCATGCCGCC GCTGTACCGC ATCGACCTGG GCAAGGAGAT CTTCTATGCC
CTGGACGACG CTGAGCGCGA CGGCATCCTC GACCGCCTGG TGGCCGAGAA GCGCCGCGGC
AAGCCGCAGG TCACCCGCTT CAAGGGCCTC GGCGAGATGA ACCCGCCGCA ACTGCGCGAA
ACCACCATGG ACCCGAACAC CCGCCGGCTG GTGCAGCTGA CCCTCGACGA CTTCGAGGGC
ACCCGCGAAG TGATGGACAT GCTGCTGGCC AAGAAACGCG CCGGCGACCG CAAGAGCTGG
CTGGAAACCA AGGGCAACCT GGCCGAGGTA CTGGCCTGA
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| Protein sequence | MAQQNAYNAD AIEVLSGLDP VRKRPGMYTD TTRPNHLAQE VIDNSVDEAL AGHAKSIQVI
LHEDNSLEVI DDGRGMPVDI HPEEGVPGVE LILTKLHAGG KFSNKNYQFS GGLHGVGISV
VNALSTRVVV TVKRDGNEYQ MSFADGFKAS ELEVIGTVGK RNTGTSVHFW PDAKYFDSFK
FSVSRLKHVL KAKAVLCPGL SVTFEDKAAG EKVEWHYEDG LRSYLVDAVS EFERLPAEPF
VGSLAGNKEA VDWALLWLPE GGDAVQESYV NLIPTAQGGT HVNGLRQGLL DAMREFCEFR
NLLPRGVKLA PEDVWERIAF VLSMKMQDAQ FSGQTKERLS SREAAAFVSG VVKDAFSLWL
NAHPETGLAL AELAISNAGR RLKAGKKVER KKITQGPALP GKLADCAGQN PLRCELFLVE
GDSAGGSAKQ ARDKEFQAIM PLRGKILNTW EVDGSEVLAS QEVHDIAVAI GIDPGSSDLS
GLRYGKICIL ADADSDGLHI ATLLCALFVR HFRPLVDAGH VYVAMPPLYR IDLGKEIFYA
LDDAERDGIL DRLVAEKRRG KPQVTRFKGL GEMNPPQLRE TTMDPNTRRL VQLTLDDFEG
TREVMDMLLA KKRAGDRKSW LETKGNLAEV LA
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