Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0601 |
Symbol | |
ID | 5109563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 661710 |
End bp | 663959 |
Gene Length | 2250 bp |
Protein Length | 749 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640501812 |
Product | DNA topoisomerase IV subunit A |
Protein accession | YP_001186101 |
Protein GI | 146305636 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAT CCCTCGATTT GAGCCTGGAA GGCGTTGAAC GCCGGTCACT CGCCGACTTC ACCGAGCAGG CTTATCTCAA CTACTCCATG TACGTGATCA TGGACCGCGC CCTGCCGCAC ATCGGCGACG GCCTGAAACC CGTGCAGCGG CGCATCGTCT ACGCCATGAG CGAGCTGGGC CTGGACGCCG ACGCCAAGCA CAAGAAGTCC GCGCGCACCG TCGGTGACGT ACTCGGCAAG TTCCACCCGC ACGGCGACAG CGCCTGCTAC GAAGCCATGG TGCTGATGGC GCAGCCGTTC TCCTATCGCT ACACCCTGGT CGACGGCCAG GGCAACTGGG GTGCACCGGA CGATCCCAAG TCCTTCGCCG CCATGCGCTA TACCGAGGCG CGCCTGTCGC GCTACTCGGA GGTGCTGCTG TCCGAGCTGG GCCAGGGCAC CGTGGACTGG GTACCGAACT TCGACGGCAC CATGAACGAG CCAGCCACTC TGCCGGCGCG CCTGCCCAAC CTGCTGCTCA ACGGCACCAC CGGCATCGCC GTGGGCATGG CCACCGACGT GCCGCCGCAC AACCTGCGCG AGGTAGCGGC TGCCTGCGTG CGCCTGCTGG ACGAGCCGGG CGCCACTGTC GAGCAGCTGT GCGAACACAT CCAGGGCCCG GACTTCCCCA CCGAGGCCGA GGTCATCACG CCCAAGGCGG ACTTGCTGAA GATCTACGAG AGCGGCCGCG GCTCGGTGCG CATGCGCGCC GTGTACCGGG TAGAGGACGG CGATATCATC GTCACCGCCC TGCCGCATCA GGTCTCCGGG GCCAAGGTGC TGGAGCAGAT CGCCGCGCAG ATGCAGGCCA AGAAGCTGCC GATGGTCGCC GACCTGCGTG ACGAGTCGGA CCACGAGAAC CCCACCCGCA TTGTCATCAT CCCGCGTTCC AACCGCGTCG ACGCCGACGA GCTGATGACC CACCTGTTCG CCACCACCGA TCTGGAGTCC AGCTACCGGG TCAACACCAA CGTCATCGGC CTCGACGGCA AGCCGCAGGT CAAGGATCTG CGCACCCTGC TCAGCGAGTG GCTGGTGTAC CGCGTCGGCA CCGTGCGCCG CCGCCTGCAG TTCCGCCTGG ACAAGGTGGA AAAGCGCCTG CACCTGTTGG AAGGCCTGCT GATCGCCTTC CTCAACCTGG ATGAAGTGAT CCGCATCATC CGCACCGAAG ACCAACCCAA GCCGGTGCTG ATGGAAGCCT TCGGCCTGAC CGAGGTGCAG GCCGACTACA TCCTCGACAC CCGTCTGCGT CAGCTGGCGC GCCTGGAAGA GATGAAGATC CGCGGCGAGC AGGACGAGCT GGCCAAGGAG CGCGAGAAAC TGCTGGCCCT GCTCGGCAGC GAAGCCAAGC TGAAGAAGCT GGTGCGCAAG GAAATCATCG AGGACGCCGA GAAGTACGGC GACGACCGCC GCTCGCCGAT CGTCGCCCGC GCCGAGGCCA GGGCGCTGTC GGAAACCGAG CTGATGCCGA CCGAGCCGGT TACCGTGGTG CTCTCGGAAA AAGGCTGGGT GCGCTGCGCC AAGGGCCACG ACATCGACGC CACCGGCCTG TCCTACAAGG CCGGCGACGG CTTCAAGGCC GCCGCGCCCG GACGCTCGAA CCAGTACGCG GTGTTTATCG ACTCCACCGG CCGCAGCTAT TCGCTGGCCG CCCACAGCCT GCCGTCGGCG CGTGGCCAGG GCGAGCCGCT GACCGGCCGC CTGACCCCGC CGCCAGGCGC GACCTTCGAA TGCGTGATGC TGCCGGAAGA CAGCGCGCTG TACGTGATCG CCTCCGACGC CGGCTACGGC TTCGTGGTCA AGGGCGAGGA CCTGCAGGCC AAGAACAAGG CCGGCAAGGC GCTGCTCAGC CTGCCCAACG GCGCCAAGGT GGTGGCACCC AAGCCTGTAA CCAACCTGGA AGACGATTGG CTGGCCGCGG TGACGACCGA AGGCCGTCTG CTGCTGTTCA AGGTCACCGA TCTGCCGCAA CTGGGCAAAG GCAAGGGCAA CAAGATCATC GGCATACCCG GTGAGCGAGT GGCCAGTCGC GAGGAATACC TGACCGACCT GGCCGTGCTG CCGAGTGGCG CCAGCCTGGT GCTGCAGGCC GGCAAGCGCA CCCTGACGCT CAAGGCAGAC GACCTGGAGC ACTACAAGGG CGAGCGTGGC AGGCGCGGCA ACAAACTGCC CCGAGGTTTC CAGCGAGTCG ATCAGCTTCT GGTGGAATAG
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Protein sequence | MSESLDLSLE GVERRSLADF TEQAYLNYSM YVIMDRALPH IGDGLKPVQR RIVYAMSELG LDADAKHKKS ARTVGDVLGK FHPHGDSACY EAMVLMAQPF SYRYTLVDGQ GNWGAPDDPK SFAAMRYTEA RLSRYSEVLL SELGQGTVDW VPNFDGTMNE PATLPARLPN LLLNGTTGIA VGMATDVPPH NLREVAAACV RLLDEPGATV EQLCEHIQGP DFPTEAEVIT PKADLLKIYE SGRGSVRMRA VYRVEDGDII VTALPHQVSG AKVLEQIAAQ MQAKKLPMVA DLRDESDHEN PTRIVIIPRS NRVDADELMT HLFATTDLES SYRVNTNVIG LDGKPQVKDL RTLLSEWLVY RVGTVRRRLQ FRLDKVEKRL HLLEGLLIAF LNLDEVIRII RTEDQPKPVL MEAFGLTEVQ ADYILDTRLR QLARLEEMKI RGEQDELAKE REKLLALLGS EAKLKKLVRK EIIEDAEKYG DDRRSPIVAR AEARALSETE LMPTEPVTVV LSEKGWVRCA KGHDIDATGL SYKAGDGFKA AAPGRSNQYA VFIDSTGRSY SLAAHSLPSA RGQGEPLTGR LTPPPGATFE CVMLPEDSAL YVIASDAGYG FVVKGEDLQA KNKAGKALLS LPNGAKVVAP KPVTNLEDDW LAAVTTEGRL LLFKVTDLPQ LGKGKGNKII GIPGERVASR EEYLTDLAVL PSGASLVLQA GKRTLTLKAD DLEHYKGERG RRGNKLPRGF QRVDQLLVE
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