Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0580 |
Symbol | |
ID | 5109543 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 638238 |
End bp | 639242 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640501793 |
Product | lipopolysaccharide heptosyltransferase I |
Protein accession | YP_001186082 |
Protein GI | 146305617 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
TIGRFAM ID | [TIGR02193] lipopolysaccharide heptosyltransferase I |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.0447499 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCGGGTGC TGATCATCAA GACCTCGTCG CTGGGCGACG TGGTACATAC CCTGCCGGCA CTGACCGATG CGGCCCGCGC CATTCCCGGC ATCCGCTTCG ACTGGGTGGT GGAGGAAGGC TTCGCCGAGA TTCCCGCCTG GCATCCGGCC GTTTCCCAGG TGATTCCGGT GGCCATCCGC CGCTGGCGCA AGCACCCGCT GCGCACCTGG CGCAGCGGCG AATGGGCGCG CTTCAAGCAG CGTCTGCGCG AAACCCGTTA CGACCTGGTG ATCGATGCCC AGGGCCTGCT CAAGAGTGCC TGGCTGACGC GCTACGTGCA GGCGCCGGTG GCCGGGCTGG ATCGCGATTC GGCGCGTGAA CCGCTGGCCA GCCGCTTCTA TGACCGGCGC TATGCAGTGG CCAGGGATCA GCATGCCCTG GAGCGCGTGC GCCAGTTGTT CGCCCAGGCG CTGGATTATC CACTGCCGGC CGGCAGCGGC GACTACGGTC TGAATCGCGC GGCGATGATG GATGCCATGG CGCAGCCCTA TCTGGTGTTC CTGCATGGCA CCACCTGGGC CAGCAAGCAC TGGCCGGAAG CCGACTGGCG CGCCCTGGCC GAGCGCATGG ACGAGCTGGG CTGGGCCGTG CGCCTGCCCT GGGGCAACGA GACGGAGAAG GCACGTGCCG AACGCATCGC CGCCGGCCTC ACGCATGCCG CCGTGCTGCC GAAACTGAAT CTGGCCGGCG TAGCCAAGGT GATCGCTGGC GCCAGCGCCT GCGTTTCCGT CGACACCGGC CTCGGTCATT TGGCTGCGGC GCTGGATGTG CCGAACATTT CCCTCTACGG TCCGACCCTG CCCGGCAAGG TGGGCGCCTA TGGCCGTAGC CAGATTCATC TGTGCGCCAG TGGCCCGAAC GCCGGCAGCG GTGACCGTGA CAAGCCCTGC TTCGATGGCC TCGGTGCAGA GCGCGTTGGC CTGGAGCTGG AGGCGCTGCT GCTGGCGCCT CCCGGCACCC TTTAA
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Protein sequence | MRVLIIKTSS LGDVVHTLPA LTDAARAIPG IRFDWVVEEG FAEIPAWHPA VSQVIPVAIR RWRKHPLRTW RSGEWARFKQ RLRETRYDLV IDAQGLLKSA WLTRYVQAPV AGLDRDSARE PLASRFYDRR YAVARDQHAL ERVRQLFAQA LDYPLPAGSG DYGLNRAAMM DAMAQPYLVF LHGTTWASKH WPEADWRALA ERMDELGWAV RLPWGNETEK ARAERIAAGL THAAVLPKLN LAGVAKVIAG ASACVSVDTG LGHLAAALDV PNISLYGPTL PGKVGAYGRS QIHLCASGPN AGSGDRDKPC FDGLGAERVG LELEALLLAP PGTL
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