| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0557 |
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| Symbol | |
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| ID | 5108181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 599660 |
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| End bp | 601450 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640501770 |
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| Product | citrate transporter |
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| Protein accession | YP_001186059 |
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| Protein GI | 146305594 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.000015136 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCTGGG ACTCCCTGCC CTTGCTGTTC GTCGGCGCCC TGCTGATCTG GGTGCTGTAC
GCCTTCGTGC GCGAAAAGTG GAGCCCGGAT ATCGTCGCCG CGATCGCAGT GGCGGCGCTG
CTGGTCAGCC AGTTGCTGGA GCCCAAGGAA GTGCTCAGCG TGCTTTCCAA CTCGGCGCCG
GTGACCATCG CCTGCATGTT CGTGCTGTCC GCCGCACTGG AGCGCACCGG CTGCATCGAT
GCGCTGGGCA ACTGGCTGGG CAACCTGGTC GGCACCAGCC CGATCCGCGT GCTCACCGGC
CTTACCCTCA CCGCGCTGGT GGTATCGGCC TGCCTCAACA ACACCCCGGT GGTGGCCATT
CTCACCCCGG TGGCCATCGC CCTGGCGCGC CGCGCCGGCA CCCTGCCGTC CAAGCTGCTG
ATCCCGCTGT CCTACGCCAC CATCCTCGGC GGCACCCTGA CCATGATCGG CACCTCCACC
AACATCCTGG TCGACGGCGT GGCACGCAAG GCCGGCCTCG CCCCCTTCGG CATCTTCGAG
ATCACCGGCG CCGGCCTGAT CATGGCTACG GTCGGCATGC TCTACCTGCT GACCATCGGC
CGCCACCTGC TGCCGGAGCG CGAGACCCTG TCGCGCCAGC TGCGCCCCGA CCTGTCGCGC
ACCTTCATGA CCGAGCTGCT GGTGCCGCAC GACTCGCCGA TGATCGGCAA GACCCTGCAC
GAGGCCAACC TCAATGGCGG CAGCGGCCTG CAGGTACTCA AGCTGTTTCG TGAAGAACTG
GAGCTGACCG AGCCCGGCGC CGACACCCTG CTGGCCAGCG GCGACCGCCT GGTGCTGCAT
GGCCAGGTCA AGGACGTGGT GGAACTGCGC GAAAGCGGCC ACCTGAGCTT CAACCGTGGC
GATGCCTTCG AGACCATCAG CAGCCATGAC GTGATCCTCG CCGAGGCCAT AGTCGGGCGT
AACTCGCGCT ACAGCCACCG CCCCATGCGC GACCTCGACC TCACCGCGCG CTACGGCATC
GCCGTGCTCG CCGTGCACCG CCAGGACGAG AACGTGCAGG GCAACCTCGA CGACTTCGAG
CTGCAGTTCG GCGACGTGAT GCTGGTAGAA GGCACCCCCG CGCAAATCAA GCGCTTCGCC
GACAACGGCG AGCTGATCAG CCTCAACGCC GTGCAGGAGC GCGCCTTCCG CCGCGACAAG
GCGCCCATCG CCATCGGCGC CACCCTGGCG GTGATGCTGC TGGCCGCCTT CGGCGTGATG
CCCATCGAGG GCCTGGCGAT CATCGGCGCG GTGACCGTGC TGGCGACCCG CTGCCTGGAT
GTGGAGGACG CCTACAAGGC AGTGGACTGG AAGATCCTCA GCCTGATCTT CGGCATGCTG
GCCATCAGCA TCGCCATGGA CAAGGTCGGC CTGGTCAAGC TGCTGGTGGA GAACGTCATG
GGCTGGCTGC CCTGGGCCGG ACCACTGCTG ATGCTGAGCT TCATCTACCT GTTCACCTCG
ATCCTCACCG AGATGCTGTC GAACAACGCG GTGGCGGTAC TGGTGACGCC CATCGCCATC
GGCATGGCCC AGCACCTGGG CGTCGATCCG CGCGCCTTCG TGGTCGCGGT GATGTTCGCC
GCCAGCGCCA GCTTCGCCAC GCCCATCGGC TACCAGACCA ACACCTTCGT CTACAACGCC
GGTGGCTACC GCTTCACCGA CTTCATGAAG GTCGGTATAC CGCTGAACCT GCTGCTGTGG
GGCGTGGCCA CCCTGGTCAT CCCCTGGTTC TTCCCGCTGA CCCCGGTCTG A
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| Protein sequence | MPWDSLPLLF VGALLIWVLY AFVREKWSPD IVAAIAVAAL LVSQLLEPKE VLSVLSNSAP
VTIACMFVLS AALERTGCID ALGNWLGNLV GTSPIRVLTG LTLTALVVSA CLNNTPVVAI
LTPVAIALAR RAGTLPSKLL IPLSYATILG GTLTMIGTST NILVDGVARK AGLAPFGIFE
ITGAGLIMAT VGMLYLLTIG RHLLPERETL SRQLRPDLSR TFMTELLVPH DSPMIGKTLH
EANLNGGSGL QVLKLFREEL ELTEPGADTL LASGDRLVLH GQVKDVVELR ESGHLSFNRG
DAFETISSHD VILAEAIVGR NSRYSHRPMR DLDLTARYGI AVLAVHRQDE NVQGNLDDFE
LQFGDVMLVE GTPAQIKRFA DNGELISLNA VQERAFRRDK APIAIGATLA VMLLAAFGVM
PIEGLAIIGA VTVLATRCLD VEDAYKAVDW KILSLIFGML AISIAMDKVG LVKLLVENVM
GWLPWAGPLL MLSFIYLFTS ILTEMLSNNA VAVLVTPIAI GMAQHLGVDP RAFVVAVMFA
ASASFATPIG YQTNTFVYNA GGYRFTDFMK VGIPLNLLLW GVATLVIPWF FPLTPV
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