| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0541 |
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| Symbol | |
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| ID | 5108165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 578348 |
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| End bp | 580759 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640501754 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001186043 |
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| Protein GI | 146305578 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATACGCC TGCTGAAGTT CTTCTGGTGG TCTTGCGTTG CCGTTTTTTG TGGGCTGTTG
CTCAGTTTGA GCGGTGCGTT TCTTTATCTT AGCCCGACCC TTCCGTCCGT CGAGTCGCTG
CGCCAGGTGC AGTTGCAGAT CCCGCTGCGC GTGTACAGCA GCGATGCCAA GCTGATCGCC
GAATTCGGCG AGATGCGCCG CTCGCCCATC CGCTTCGATG AAATCCCCAA GGAGTTCATC
AGTGCCCTGC TGGCCGCCGA GGACGATAAT TTCGCCAACC ATTATGGCGT CGATGTGACC
AGTCTGATGC GCGCTGCCAC GCAATTATTG AAGAGCGGGC AGATTCAGAG CGGCGGCAGC
ACCATCACCA TGCAGGTGGC GAAGAACTTC TTCCTGACCA GCGAACGCAG CTTCTCGCGC
AAGGCCACGG AGATCCTCCT GGCCCTGCAG ATCGAACGCG AGCTGAGCAA GGACGAGATC
CTCGAGCTCT ACGTCAACAA GATCTACCTC GGCCACCGCG CCTATGGCAT CGAGGCTGCC
GCGCAGGTGT ATTACGGCAA GTCGATTCGC GATCTGAACC TGGCGCAGAT GGCCATGATC
GCCGGACTGC CGAAGGCGCC GTCGCGCTAC AACCCGCTGG TCAATCCGAC CCGTGCCAAG
GAACGCCGCG ACTGGATTCT CGGCCGCCTC TACCGCCTCG GACGCATTGA CCAGGCCAGC
TACGAAACCG CCCTGGCCGA AGAAGTCGAT GCCCGCTACC ACGTCCCGGC GCCGGAGCTG
AGCGCACCTT ACATAGCCGA GATGGCACGC GCCGAGATGG TGGGTCGCTA TGGCAGCGAG
GCCTACACGG AAGGCTTCAA CGTCACCACC ACCGTCCCCA GCCATCTTCA GGAAGTGGCC
AATACCGCGC TGCGCGAAGG GCTGATCGCC TACGATCAGC GTCACGGCTA CCGCGGCCCC
GAGAGCCGGC TACCGGGTCT GACCCGCGAC GCCTGGCTGG CAGAGCTGGC CAAGTTCCGC
TCCATTGGCG GCCTGGAACC GGCCGTGGTC ACTCAGGTGG AAAAAAGCGG CGTCCTCGTC
CTGACCCGCA ACGGCGAAGA GCAGGCGGTG TCCTGGGACA GCATGAAATG GGCGCGCCCC
TTCCTCAACA CCAACAGCCT CGGCCCACGC CCCCAGCAAC CGGCGGACGT GGCCCAGGTC
GGCGACATCA TTCGTGTGCA GCGTCAGGCG GACGAAAGCC TGCGCTTCAT GCAGGTACCG
GCGGCGCAAA GCGCGCTGGT CTCCCTCGAC CCCTACAGCG GCGCCATTCA GGCACTGGTC
GGCGGCTTCT CCTTCGACCA GAGCAACTAC AACCGCGCCG TCCAGGCCAA GCGTCAGCCC
GGCTCCAGCT TCAAGCCCTT CATCTATAGT GCCGCGCTGG ACAATGGCTA CACGGCCTCG
ACCCTGGTCA ACGACGCGCC GATCATTCTC TCCGACGACT ATCTGACGCA GAAGTGGCGC
CCGAAGAACG ACAACAACAC CTTCCTCGGC CCGATTCGCA TGCGCGAGGC GTTGTACAAG
TCGCGCAACC TGGTGTCCAT TCGCCTGCTG CAGGACATGG GCATCGACCG CAGCCTGCGC
TACATCGAAC GCTTCGGCTT CGCTCCGCAG GACCTGCCGC GCAACCTGTC CCTGGCCCTG
GGCACCGCCA GCCTGACACC GCTGGAGATC GCCGAGGGCT GGGCCACCTT CGCCAACGGC
GGCTACAAGA TCGAGCCCTA CCTGATCGAG CGCATCGATG ACCGCCACGG CAAGCCGCTG
TTCCGCGCCA ACCCCGCGCG CGTACCCGGC AGCGAGCCAT CGGAGGAGAT CGCCAATCTC
GCCGTGAACG CCACCGACGA CCTGCCGCCG GAAGAACCCA GGACGGCCGA ACAGATCATC
GACGAACGCA CCGCCTACAT CATGACCAGC ATGCTGCAGG ACGTGATCAA GCGCGGCACC
GGTCGTCGTG CCCTGGCCCT GGGCCGCGAT GACCTGGCCG GCAAGACCGG CACCACCAAC
GAGTCCAAGG ACAGCTGGTT CTCCGGCTAC AACGCCGACT ACGTGACCAC CGTCTGGGCC
GGCTTCGACC AACCGGAGAG CCTGGGTCGC CACGAGTATG GCGGCACCGT GGCCCTGCCG
ATCTGGATGA ACTATATGGG CGCGGTGCTC AAGGACCGCC CGAGCCATCT GCCGAAGGAA
CCCAAGGGCC TGCTGACCCT GCGCGTCGAT CCGGTCAGCG GGCGCGCCGC AGCACCTGGC
ACCCCCGACG CCTACTTCGA GCTGTTCAAG AGCGAGGACT CGCCGCCGCC GATGAGCGAA
TTCGAACCGG GCATGGGCAT TCCTGGCAGC CCGCTGCCGG CCGACGAGAT GGCGCCAATC
GATCTGTTCT GA
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| Protein sequence | MIRLLKFFWW SCVAVFCGLL LSLSGAFLYL SPTLPSVESL RQVQLQIPLR VYSSDAKLIA
EFGEMRRSPI RFDEIPKEFI SALLAAEDDN FANHYGVDVT SLMRAATQLL KSGQIQSGGS
TITMQVAKNF FLTSERSFSR KATEILLALQ IERELSKDEI LELYVNKIYL GHRAYGIEAA
AQVYYGKSIR DLNLAQMAMI AGLPKAPSRY NPLVNPTRAK ERRDWILGRL YRLGRIDQAS
YETALAEEVD ARYHVPAPEL SAPYIAEMAR AEMVGRYGSE AYTEGFNVTT TVPSHLQEVA
NTALREGLIA YDQRHGYRGP ESRLPGLTRD AWLAELAKFR SIGGLEPAVV TQVEKSGVLV
LTRNGEEQAV SWDSMKWARP FLNTNSLGPR PQQPADVAQV GDIIRVQRQA DESLRFMQVP
AAQSALVSLD PYSGAIQALV GGFSFDQSNY NRAVQAKRQP GSSFKPFIYS AALDNGYTAS
TLVNDAPIIL SDDYLTQKWR PKNDNNTFLG PIRMREALYK SRNLVSIRLL QDMGIDRSLR
YIERFGFAPQ DLPRNLSLAL GTASLTPLEI AEGWATFANG GYKIEPYLIE RIDDRHGKPL
FRANPARVPG SEPSEEIANL AVNATDDLPP EEPRTAEQII DERTAYIMTS MLQDVIKRGT
GRRALALGRD DLAGKTGTTN ESKDSWFSGY NADYVTTVWA GFDQPESLGR HEYGGTVALP
IWMNYMGAVL KDRPSHLPKE PKGLLTLRVD PVSGRAAAPG TPDAYFELFK SEDSPPPMSE
FEPGMGIPGS PLPADEMAPI DLF
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