Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0540 |
Symbol | |
ID | 5108164 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 577014 |
End bp | 578282 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640501753 |
Product | malate dehydrogenase |
Protein accession | YP_001186042 |
Protein GI | 146305577 |
COG category | [C] Energy production and conversion |
COG ID | [COG0281] Malic enzyme |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGATC TAAAAACTGC CGCTCTCGAA TATCACGCTC AGCCCCGCCC AGGTAAGCTG AGCGTCGAGT TGACCAAAGC CACCGCTACC GCCCGCGACC TGTCGCTGGC CTACAGCCCA GGTGTCGCCG AGCCGGTCCG CGAAATCGCC CGCGATGCCG AGCTGGCCTA CCGTTACACC GGTAAAGGCA ACTTGGTCGC CGTGATTTCC GATGGCACCG CTATCCTCGG CCTGGGCAAC CTCGGCCCGC TGGCGTCCAA GCCGGTCATG GAAGGCAAGG GTGTGCTGTT CAAGCGTTTC GCCGGCATCG ACGTGTTCGA CATCGAGGTC GATTCCGAGA GCCCGCAGGC TTTCATCGAT ACCGTAAAGC GCATCTCCAT CACCTTCGGC GGCATCAACT TGGAAGATAT CAAGGCCCCC GAGTGCTTCG AGATCGAGCG CGCACTGATC GAGCAATGCG ACATCCCGGT GTTCCACGAT GACCAGCACG GCACCGCGAT CGTCACCGCG GCCGGCATGC TCAACGCCCT GGAAATCGCC GGCAAGACCC TGGAAGAAGC CAAGATCGTC TGCCTCGGCG CCGGCGCAGC GGCCATCTCC TGCATGAAGC TGCTGGTGAG CATGGGCGCC AAGGTCGAGA ACATCTTCAT GATCGACCGC AAGGGCGTGA TCCACGCCGG CCGCGACGAC CTGAACCAGT ACAAGGCGGT ATTCGCTCAC GAAACCGACC GTCGCACCCT GTCCGATGCC CTCGACGGTG CGGACGTATT CGTCGGTCTG TCCGGCGCCA ACCTGCTGAG CCCGGAAGAC CTCAAGCGCA TGGCGGCCAA CCCGATCGTC TTCGCCTGCT CCAACCCGGA TCCGGAAATC AAGCCGGAGC TGGCGCACGA GACCCGTAGC GACGTGATCA TGGCCACCGG TCGTTCCGAC TACCCGAACC AGGTCAACAA CGTGCTGGGC TTCCCCTTCA TCTTCCGCGG TGCCCTGGAC GTGCGCGCCA CCCGCATCAA CGAAGAAATG AAGATCGCCG CTGCCCTGGC GCTGCGTGAC CTGGCCAAGC TGCCGGTACC GCAGGACGTG TGCGATGCCT ACGGCGGCAT CAAGCTGGAG TTCGGCCGCG AGTACATCAT TCCGAAGCCG ATGGATCAGC GTCTGATCAC CGTGGTCTGC GATGCCGTGG CCAAGGCCGC GATCGAGTCC GGCGTGGCGA CTCTGCCCTA TCCGAAGCAC TATCCGCTGC AGTCGGTGGA TGAAGTGTTC AACGGCTAA
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Protein sequence | MSDLKTAALE YHAQPRPGKL SVELTKATAT ARDLSLAYSP GVAEPVREIA RDAELAYRYT GKGNLVAVIS DGTAILGLGN LGPLASKPVM EGKGVLFKRF AGIDVFDIEV DSESPQAFID TVKRISITFG GINLEDIKAP ECFEIERALI EQCDIPVFHD DQHGTAIVTA AGMLNALEIA GKTLEEAKIV CLGAGAAAIS CMKLLVSMGA KVENIFMIDR KGVIHAGRDD LNQYKAVFAH ETDRRTLSDA LDGADVFVGL SGANLLSPED LKRMAANPIV FACSNPDPEI KPELAHETRS DVIMATGRSD YPNQVNNVLG FPFIFRGALD VRATRINEEM KIAAALALRD LAKLPVPQDV CDAYGGIKLE FGREYIIPKP MDQRLITVVC DAVAKAAIES GVATLPYPKH YPLQSVDEVF NG
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