| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0536 |
|---|
| Symbol | |
|---|
| ID | 5108160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 572061 |
|---|
| End bp | 574292 |
|---|
| Gene Length | 2232 bp |
|---|
| Protein Length | 743 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640501749 |
|---|
| Product | primosome assembly protein PriA |
|---|
| Protein accession | YP_001186038 |
|---|
| Protein GI | 146305573 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
|---|
| TIGRFAM ID | [TIGR00595] primosomal protein N' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGCTC GTGTGCCCGA TCTGATCCTG CGCCTCGCCC TGCCCTCGCC GCTGCGCCGC
CTGTTCGACT ACCGCGCCCC TGCCGGCGTG CCGCGCAGCG CGCTGCAGCC CGGCGTGCGC
CTGCGTGTGC CGTTCGGCCG GCGCGAGATC ATCGGCATTC TGGTGGAGGT GGACAGCCAG
AGCGAGGTGC CGGCGGACAA GCTCAAGCCG GCCCTGCAAC TGCTCGATGC CCGCCCACCG
CTGCCAGCCC CGCTGTTCAA GCTGTGCCTG TGGACGGCGC AGTACTACCA GCACAGCCTC
GGCGACACCC TGAGCTGGGC ATTGCCGGTG CTGTTGCGCC AGGGCGAGCC GGCGGAGACG
CGCCAGGAGC GCTTCTGGCT GGCCAACAGC GGTGCCAGCG TCGACGATCC GCGCCTGGCT
CGTGCACCGC GCCAGCGCGA GGCCCTCAAG GCCCTGGCGC AGCACCCGCA TGGCGTCGCC
CACGGCCTGC TCAGCCAACT GCAGCTCAAC CGCGACAGCC TGCAGCTGCT CCACGAGAAA
GGCCTGGTGC GCGTGGAAGT GCGTCGCACC CAGCCCCATG CCAAGCCGGC GCACTGGCTG
GCGCAACCGG AGCTGCCGCT CAACGCCGAG CAGCGCGCGG CGGTGAATGC CGTGGCGTCG
GGCTGGGGTC AGTTCAATGC CTTCCTGCTG GCCGGCATTA CCGGCAGCGG CAAGACCGAG
GTCTACCTGC AACTGATCCA CCAGTGCCTG GCAGCCGGCA AGCAGGCGCT GGTGCTGATC
CCCGAGATCA ACCTCGGCCC GCAGACCTTC GATCGCTTCG CTCGCCGCTT CAATGCACGC
ATCGCCCTGC TGCACTCGGC GGTGAACGAC CGCGAGCGCC TGGATGCCTG GCTGGCCGCA
CGCGATGGCG AGGCCGACAT CATCATCGGC ACCCGCTCGG CGCTGTTCAC GCCGATGAAG
AACCCGGGGC TGATCATCGT CGACGAAGAA CACGACGCCT CCTATAAACA GCAGGAAGGT
CTGCGCTACC ACGCCCGCGA CCTGGCCCTG GTGCGCGCAC GCCAGGAGAA CCTGCCCATC
GTGCTGGGCT CGGCCACACC CTCGCTGGAA AGCCTGCACA ACGCCCACAG CGGCCGCTAC
GCCCTGCTCA AGCTGACCCA ACGCGCCGGT GGTGCCAGCC AGCCGCGCTT TCTGCGCCTC
GACGTGAAGA GCCGGCCACT GGACTCGGGC ATCTCCGGGC CGATGCAGCA GGCCATCGCC
CAGACCCTGG CCGCCGGCCA GCAGGTGCTG GTGTTCCTCA ACCGCCGCGG CTTCGCCCCG
ACCCTGCTGT GCCACGACTG TGGCTGGCTG TCCGAATGCC CACGCTGCGA TGCGCGCATG
ACCGTGCACC AGCGCCATCA GGAGCTGCGC TGCCATCACT GCGGGCATGT CGAGCGGCAG
CCGAGCAATT GCCCCAAGTG CCAGCACGTC GACCTGCGCC CGGTCGGCGC CGGCACCGAA
CGCGCCGAGG AGCGTCTGGC GGTGCTGTTC CCCGACTATC CGGTGCTGCG CATCGACCGC
GACAGCACCT CGCGCAAGGG CGCCATGGAC CGGCTGTTCG CCACCATCAA CAAGGGCGAG
CCGTGCATCC TGGTCGGCAC GCAGATGCTC GCCAAGGGGC ATCACTTCCC GCGGGTGACG
CTGGTGTCGA TTCTCGATGC CGACGGCGGC CTGTTCTCCG CGGACTTTCG CGCCAGCGAA
CGCATGGCGC AGCTGATCGT GCAGGTGGCC GGTCGCGCCG GACGTGCCGA GGAACCGGGC
AAGGTGATCA TCCAGAGCCA CCTGGCCGAC CATCCGCTGC TGGTACAGCT GACCGAGCAG
GGCTACTTCG CCTTCGCCGA ACAGGCGCTC AGTGAACGCC GCAGCGCCGG CCTGCCGCCC
TTCTGCCACC TGGCCCTGCT GCGCGCCGAG GCGCACAAGC CCGGCCAGGC CGAGAGCTTT
CTCGACGAGG CCTGCAACGA AGCCGAGCAC CTGCTGGGTG AGCTGGGCCT GTCCGGCATC
GAACTGCTCG GCCCGGTGCC GGCGCCGATG GAGCGCCGCG CCGGACGCTT CCGCGCGCAG
TTGCTGCTGC AGGGCAATGC CCGTGCGCCG CTGCATCGCC TGCTGACGCC CTGGCTGCAG
GCGCTGGAGC AGATGCCCGG CGGCCGTGCG GTGCGCTGGT CGCTGGACGT CGATCCGATC
GACCTGTTCT GA
|
|---|
| Protein sequence | MEARVPDLIL RLALPSPLRR LFDYRAPAGV PRSALQPGVR LRVPFGRREI IGILVEVDSQ
SEVPADKLKP ALQLLDARPP LPAPLFKLCL WTAQYYQHSL GDTLSWALPV LLRQGEPAET
RQERFWLANS GASVDDPRLA RAPRQREALK ALAQHPHGVA HGLLSQLQLN RDSLQLLHEK
GLVRVEVRRT QPHAKPAHWL AQPELPLNAE QRAAVNAVAS GWGQFNAFLL AGITGSGKTE
VYLQLIHQCL AAGKQALVLI PEINLGPQTF DRFARRFNAR IALLHSAVND RERLDAWLAA
RDGEADIIIG TRSALFTPMK NPGLIIVDEE HDASYKQQEG LRYHARDLAL VRARQENLPI
VLGSATPSLE SLHNAHSGRY ALLKLTQRAG GASQPRFLRL DVKSRPLDSG ISGPMQQAIA
QTLAAGQQVL VFLNRRGFAP TLLCHDCGWL SECPRCDARM TVHQRHQELR CHHCGHVERQ
PSNCPKCQHV DLRPVGAGTE RAEERLAVLF PDYPVLRIDR DSTSRKGAMD RLFATINKGE
PCILVGTQML AKGHHFPRVT LVSILDADGG LFSADFRASE RMAQLIVQVA GRAGRAEEPG
KVIIQSHLAD HPLLVQLTEQ GYFAFAEQAL SERRSAGLPP FCHLALLRAE AHKPGQAESF
LDEACNEAEH LLGELGLSGI ELLGPVPAPM ERRAGRFRAQ LLLQGNARAP LHRLLTPWLQ
ALEQMPGGRA VRWSLDVDPI DLF
|
|---|
| |