| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0481 |
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| Symbol | |
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| ID | 5108400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 514463 |
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| End bp | 516160 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640501694 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001185983 |
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| Protein GI | 146305518 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCACG AATTCGATTA CATCATCATC GGCGCCGGTT CGGCCGGTAA CGTCCTGGCC
ACCCGCCTGA CCGAAGACGC CGACGTCAGC GTGCTGCTGC TGGAAGCCGG CGGCCCCGAC
TATCGCCTGG ATTTCCGCAC CCAGATGCCC GCCGCCCTGG CCTTTCCGCT GCAGGGCCGG
CGCTACAACT GGGCCTACGA GACCGACCCC GAGCCGCACA TGAACAACCG CCGCATGGAG
TGCGGACGCG GCAAGGGCCT GGGCGGCTCC TCGCTGATCA ACGGCATGTG CTACATCCGC
GGCAACGCCC TGGACTTCGA CAACTGGGCC AAGGCCAAGG GCCTGGAAGA CTGGACCTAC
CACGACTGCC TGCCCTACTT CCGCAAGGCA GAAAGCCGCG ACATCGGCCC CAACGACTAC
CACGGCGGCG ACGGCCCGGT CAGCGTGACC ACGCCCAAGG CCGGCAACAA CCCGCTGTTC
CACGCCATGG TCGAGGCCGG CGTGCAGGCC GGCTACCCGC GTACCGATGA CCTCAACGGC
TACCAGCAGG AAGGCTTCGG CCCGATGGAC CGCACCGTCA CCCCGCAGGG CCGGCGCGCC
AGCACCGCGC GGGGCTACCT GGACCAGGCA CGGGAGCGCC CCAACCTGAC CATCGTCACC
CATGCCACCA CCGACCGCAT CCTCTTCGAC GGCAAGCGCG CCAGCGGCGT CAGCTACCTG
ATCGGCAACG CCAACGATGC CACCGAAGCC CGTGCTCGCC GCGAAGTGCT GCTATGCGCC
GGCGCCATCG CCTCGCCGCA GATCCTGCAG CGCTCCGGCG TCGGCCCCGC CGCGCTGCTG
CGCGAGCTGG ACATCGCCCT GGTGCACGAA CTGCCTGGCG TCGGCCAGAA CCTGCAGGAT
CACCTGGAGA TGTACCTGCA GTACGCCTGC ACCCAACCGG TGTCGCTGTA CCCGGCGCTC
AAGCTGCTCA ACCAGCCCGG CATCGGCGCG CAATGGCTGT TCACCGGCAA CGGCATCGGC
GCCAGCAACC AGTTCGAGGC CGGCGGCTTC ATCCGCACCC GTCCGGAGTT CGCCTGGCCC
AACATCCAGT TCCACTTCCT GCCGGTGGCG ATCAACTACA ACGGCAGCAA CGCGGTGAAC
GAGCACGGCT TCCAGGCCCA CGTCGGCTCC ATGCGCTCGC CCAGCCGCGG GCGCATCCAG
CTCAAGTCGA AAGACCCGCG CCAGCACCCG AGCATCCTGT TCAACTACAT GAGTCATGAG
CAGGACTGGC AGGAGTTCCG CGACGCCATC CGCATCACCC GCGAGATCAT GGCTCAGCCG
GCGCTCGACT CCTACCGCGG CCGCGAGATC AGCCCCGGTA TCGACTGCCA GAGCGACGCC
GAACTGGATG CCTTCATCCG CGAACATGCG GAAACCGCCT TCCATCCGTC CTGCTCGTGC
AAGATGGGCG AGGACGACAT GGCGGTGGTC GACGGCCAGG GCCGCGTGCA CGGCGTGCAG
GGGCTGCGCG TGGTGGACGC CTCGATCATG CCGGAGATCA TCACCGGCAA CCTCAACGCC
ACCACCATCA TGATGGCCGA GAAGATCGCC GACCGGATTC GCGACCGTCA GCCGCTGCCG
CGCAGCAACG CACCCTACTT CGTCGCCGGC GAGCGGCCGG TGCGCGGCCA ACCGCAGCGC
GCGGTATCGG CGGCCTGA
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| Protein sequence | MSHEFDYIII GAGSAGNVLA TRLTEDADVS VLLLEAGGPD YRLDFRTQMP AALAFPLQGR
RYNWAYETDP EPHMNNRRME CGRGKGLGGS SLINGMCYIR GNALDFDNWA KAKGLEDWTY
HDCLPYFRKA ESRDIGPNDY HGGDGPVSVT TPKAGNNPLF HAMVEAGVQA GYPRTDDLNG
YQQEGFGPMD RTVTPQGRRA STARGYLDQA RERPNLTIVT HATTDRILFD GKRASGVSYL
IGNANDATEA RARREVLLCA GAIASPQILQ RSGVGPAALL RELDIALVHE LPGVGQNLQD
HLEMYLQYAC TQPVSLYPAL KLLNQPGIGA QWLFTGNGIG ASNQFEAGGF IRTRPEFAWP
NIQFHFLPVA INYNGSNAVN EHGFQAHVGS MRSPSRGRIQ LKSKDPRQHP SILFNYMSHE
QDWQEFRDAI RITREIMAQP ALDSYRGREI SPGIDCQSDA ELDAFIREHA ETAFHPSCSC
KMGEDDMAVV DGQGRVHGVQ GLRVVDASIM PEIITGNLNA TTIMMAEKIA DRIRDRQPLP
RSNAPYFVAG ERPVRGQPQR AVSAA
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