| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0478 |
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| Symbol | |
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| ID | 5108397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 510143 |
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| End bp | 511411 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640501691 |
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| Product | response regulator receiver modulated diguanylate cyclase |
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| Protein accession | YP_001185980 |
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| Protein GI | 146305515 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.60604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAATA TCCTGGTGAT CGAAGACAGC CCGCTGGTGC TGAAGATTCT CGAACATCTG
TTCCGCCAGG AACCGGATCT GCAACCGGTG TTCTGCGCCT CCCTGGGCGA GGCCGAGGTG
ATGCTGGAAA CCTCCGCCGG GCTGTTCTTC GCCGCCATCG CCGACCTGCA CCTGCCGGAC
GCCCCCAACG GCGAGAGCGT CGACCTGGTG ATGCGCTATC ACCTGCCGTG CATCGTGCTC
AGCGGCAGCT ACAACGAGCA GCGGCGCGAC GATCTGCTGG CCAAGGGTGT GGTCGATTAC
GTGCTCAAGG AGAGCCAGCA CTCCTACGAA TACGCCTTCC GCCTGCTGCA CCGGCTCGAC
AGCAACAGCC ATATCAAGAT CCTGGTCGCC GACGACTCCG ACACCACCCG CCACTACATC
CGCAACATCC TCACCCCGCA CCGCTACCAG GTTCTGGAGG CGCGCGACGG CAAGGAGACC
CTGCGCCTGC TCGGCGAGCA GCCGGACATC GACCTGCTGG TGCTGGACCA CGCCATGCCC
GGCGTCAGCG GCTTCGAACT GGTCAAGCTG CTGCGGCAGA AGCTCAGGCG CAACGATCTG
ATCATCATCG GCGTATCCGC CGACCCCAAG GGCTCGCTCA GTGCGCAGTT CATCAAGCAC
GGCGCCGATG ACTTCCTGCG CAAGCCATTT TGTCCCGAGG AGCTCAACTG CCGGGTGATG
TCCACCCTCG AGCGCCGCGA CCTGCTGCGC GCGCTGAAAC AGGCGGCGCA GTTCGACGCC
CTGACCGGTC TGAACAACCG CCGCGCCTTC TATGAGCAGG GTCTGCAGCT GCTGCAGCAG
GCGCAGCGCG AGGGCCGTGA AGTCAGCGTG GCGATGCTCG ACCTCGATCA CTTCAAGCAG
ATCAACGATG GCTTCGGCCA TGCCAGCGGC GACAGCGCCC TGGTGGTGTT CGCCCGCGCC
CTGTCCGCGG CCCTTCCGCA GATGCTGCTG GGCCGCCTGG GCGGCGAGGA GTTCGCCCTG
CTCAGCCTGG ACGAGGCCGA CCGGGTAGAG GCCGCACTGG ACGAGCTGCG CCACCAGTGC
GCGGCCCTGC ACTACGCAGC CGGCGCCCCG CCGCTGTCGT TCAGCGCCGG CCTCTACCGC
GGCGAACCGG ACGATCTGGA AAGCCTGCTG CACGAAGCCG ACGTCCGCCT GTACCGGGCC
AAGCAGCAGG GGCCGCACGC ACGGTGCGAG GCTGATCAAA AACCGTGGCG TTCGAGCGTC
GCGGCGTAG
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| Protein sequence | MRNILVIEDS PLVLKILEHL FRQEPDLQPV FCASLGEAEV MLETSAGLFF AAIADLHLPD
APNGESVDLV MRYHLPCIVL SGSYNEQRRD DLLAKGVVDY VLKESQHSYE YAFRLLHRLD
SNSHIKILVA DDSDTTRHYI RNILTPHRYQ VLEARDGKET LRLLGEQPDI DLLVLDHAMP
GVSGFELVKL LRQKLRRNDL IIIGVSADPK GSLSAQFIKH GADDFLRKPF CPEELNCRVM
STLERRDLLR ALKQAAQFDA LTGLNNRRAF YEQGLQLLQQ AQREGREVSV AMLDLDHFKQ
INDGFGHASG DSALVVFARA LSAALPQMLL GRLGGEEFAL LSLDEADRVE AALDELRHQC
AALHYAAGAP PLSFSAGLYR GEPDDLESLL HEADVRLYRA KQQGPHARCE ADQKPWRSSV
AA
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