| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0469 |
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| Symbol | |
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| ID | 5108388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 497444 |
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| End bp | 499249 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640501682 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001185971 |
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| Protein GI | 146305506 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.912167 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCCA GCCCATCTTC GTCGCGCACC TTGCCGGTCT CGCTGCCGAG CCTGCTGCTG
GCGCTCTGTC TGCTGCTGGC CGGCCCGCAG GCCTGGGCTG GCCTGATGCT GGACGAGACC
ACGCCACCGC GGAATCTGCA CGGGCTGGTG GATTTTCTCG ACGATCCGCA GGCCGACCTG
TCGCTGCTCG ACGTCAGCCG CGCCAACGCC CCGTTTCGCC CCTCCAGCGA GCGCCGCGAC
CTCAGCTTCG GCTACGTGCC GGGCGTGGTC TGGCTGCGCC TGCCGCTGCA GTCCAGCGCG
GCCGCAACGC TCTCCTGGCG CCTCGAACTG AACTACGCCT CACTGGACGA GGTACGGCTG
TACGACGTGG GCGCCGACGG CGTGCGCGAA ACGCGCAGCG GCGATACCGT GCCCTACGCT
CAGCGCAGCG TCGGCCATCG CAACCCGGTG TTCGAGATCG TCCTGCGACC GGGCGAGCAA
CGCACCCTCT ACCTGCGCGC CGACTCGCGC GGCAGCATGA CCCTGAGCGG TGAGCTGATG
TCGGCCCGCG CTTTCGAGCA GCACAGTCAG AAGGGCTACC TGGTGCATGC CCTGTATTGC
GGGGTGCTGA CCGCCCTGGG GCTGTACAAC CTGCTGCTGT TTCTCGCCCT GCGCGAACGC
CCCTTCCTCA ACTACGTGCT GTTCATGTTC GCCTTCGCCC TCAGCGTGCT GTCGCTCAAC
GGCCTCGGTG CGCAATACCT GTGGCCGCAT GCCGCGCCCT GGAGCAATCG CATGCTGCCG
GTCAGCCTGA CCCTGGCAGC GCTGCTCGCC GTGGTGTTCG CGCGCAGTTT CCTGGATACC
CGGCAGTGGC TGCCGCGCTG GGACCGGGTG CTGCAGGTAC TGTGCGGCGT CACCCTGCTG
GCCGTGCTCG CCACCCTGCT CCTGCCGGTG CAGACGGCCC TGCAGACCAT GTCGCTGACC
GGCCTGATCG TTACCCTGAC GCTGCTGCTC ACCAGCTTCG TTTGCGTCGG CTACCGGGTG
CCCGGTGCGC GTCTGTTCGC CCTGGCCTGG CTGATGCTGC TGAGCGGCGC GGTGCTGCTG
GCATTGCGCA ACTTCGCCCT GATCCCGTCG AACTTCATCA CCCTGTACGC CATGCAGATC
GGCTCGGGCC TGGAGATGAT CCTGCTGTCG TTCGCCCTGG CGGCCCGCTT CAACGAGCTC
AAGCGCCAGC GCGAGGCCGC CCTGCAGCTC AACGAGCAGA TCCTCGCCAA ACGCGTCACC
GAGCGGACCC TGGCGCTGGA GCTGGCCAAC CAGCGCCTCA GCGAACTGGC GCTGCAGGAC
CCGCTGACCG GCCTGGCCAA CCGCACCGCG CTGCAGCAGC ACCTGGAACA GGCCATCGCT
CGCAGCCAGC GGCGCAACGA ACTGCTGGCG GTGATGCTGA TCGACCTCGA TGGCTTCAAA
CCCGTCAACG ACCAGTACGG TCATGGTTTC GGCGATCAGG TGCTGGCCGA GGTTGCCCGG
CGCCTCAGGC ACTACCTGCG CGACGCCGAC CTGCCGGCGC GCCTGGGCGG CGACGAGTTC
GTGGTGATCT GCGAGAACGT GCAAACGGCA GCAGACGCCC GCGACCTGGC CAAGCGCGTG
CTGGAGGGGC TGGACACGCC CATTTATCTG GAAGGACGGG CCGTGCGCGT GGGCGCGAGC
ATCGGCATCG CCCTCTATCA CGGCGAGGAC GATGCCACCG CGCTGATCCG CCGGGCCGAC
GCCGCGATGT ATCGAGCCAA GGCCACCGGA CGCAACCGCG TGCACCTCAC CGCCGAACCG
GACTGA
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| Protein sequence | MSASPSSSRT LPVSLPSLLL ALCLLLAGPQ AWAGLMLDET TPPRNLHGLV DFLDDPQADL
SLLDVSRANA PFRPSSERRD LSFGYVPGVV WLRLPLQSSA AATLSWRLEL NYASLDEVRL
YDVGADGVRE TRSGDTVPYA QRSVGHRNPV FEIVLRPGEQ RTLYLRADSR GSMTLSGELM
SARAFEQHSQ KGYLVHALYC GVLTALGLYN LLLFLALRER PFLNYVLFMF AFALSVLSLN
GLGAQYLWPH AAPWSNRMLP VSLTLAALLA VVFARSFLDT RQWLPRWDRV LQVLCGVTLL
AVLATLLLPV QTALQTMSLT GLIVTLTLLL TSFVCVGYRV PGARLFALAW LMLLSGAVLL
ALRNFALIPS NFITLYAMQI GSGLEMILLS FALAARFNEL KRQREAALQL NEQILAKRVT
ERTLALELAN QRLSELALQD PLTGLANRTA LQQHLEQAIA RSQRRNELLA VMLIDLDGFK
PVNDQYGHGF GDQVLAEVAR RLRHYLRDAD LPARLGGDEF VVICENVQTA ADARDLAKRV
LEGLDTPIYL EGRAVRVGAS IGIALYHGED DATALIRRAD AAMYRAKATG RNRVHLTAEP
D
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