Gene Pmen_0408 details

Gene Information

• Locus tag: Pmen_0408
• ID: 5108330
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas mendocina ymp
• Kingdom: Bacteria
• Replicon accession: NC_009439
• Strand: +
• Start bp: 423412
• End bp: 430683
• Gene Length: 7272 bp
• Protein Length: 2423 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640501624
• Product: CheA signal transduction histidine kinase
• Protein accession: YP_001185913
• Protein GI: 146305448
• COG category: [K] Transcription; [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0643] Chemotaxis protein histidine kinase and related kinases; [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 39
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTGGAG TGGCTATGGG TGATCGGCAT GATTATGTCG CCCTGGAGTG GGTCAAAGGC 
GAGATCGGGG AAACCCTGAA GCAGGCGCGT CAGGCTCTGG AGGCGTTCGT CGAGAACCCG 
CAGGACCCCA CGCGCATGCG CTTCTGCCTG ACCTATGTGC ACCAGGTTCA CGGCACCTTG 
CAGATGGTCG AGTTCTACGG CGCGGCGTTG CTCGCCGAAG AAATGGAGCA GTTGGCCAAG 
GCGCTGATGG AAGGTCGCGT GGCCAATCAG GGCGAAGCCC TGGAAGTGCT GATGCAGGCC 
ATCCTGCAGT TGCCGGTGTA CCTCGACCGC ATCCAGACCG CTCGCCGCGA CCTGCCCATG 
GTCGTGCTGC CGCTGCTCAA CGACCTGCGC GCCGCCCGTG GCGAAAAGCT ACTGTCGGAA 
ACCAGCCTGT TCTCCCCGGA CATGTCCGCA CGCATGCCCG CGCTGCCGGA AGGCAGCATG 
GTGCGCCTGC GTACCGCCGA ATTGCCGGTG CTGCTGCGCA AGCTGCGGCA GATGCTGCAG 
ATGGCCCTGG TCGGCGTGAT CCGCAATCAG GACCTGGCCA CCAACCTAGG CTACATGGCG 
CGGGTCTTCG CGCGCCTGGA AACCCTGTGC CAGGACGCTC CGCTGGGCGG TCTGTGGCAG 
ATCGCATCCG GTATGGTCGA AGGCCTGGCC AATGGCAGCG TGGTCAATGG CACATCGGTG 
CGCACCCTGC TGCGTCAGGT CGACAAGGAG CTCAAGCGCC TGGTCGAACA GGGCGCAGAT 
GGCATCAACC AGTCCGCGCC CGACGAGCTG ACCAAGAACC TGCTGTTTTA CGTGGCCAAG 
TCGCCGGCGC AGTCGCCGCG TATCCGCGCC CTCAAGGAAC AATACCGTCT CGACGAGGCC 
CTTCCTGACA CCGACGTGGT GGACGAGGAA CGTGCCCGTC TGGCCGGCCC GGATCGCGAC 
GCCATGCGAT CGGTGGTCGC CGCGCTGTGC GAGGAGCTGG TGCGGGTCAA GGACAGCCTG 
GACCTGTTCG TGCGCAGTGA CCGCACTCAG CCCGGCGAGC TGGACGCCCT GTTGGCGCCA 
CTCAAGCAGA TCGCCGATAC CCTTGCCGTG CTGGGCTTCG GTCAGCCGCG CAAGGTCATC 
CTCGACCAAA TCGACGTGGT CCACAGCCTG TCTCTCGGTC AGCGCGAGCC CAACGACGCC 
GTATTGATGG ACGTTGCTGG TGCGCTGCTC TACGTCGAGG CGACGCTGGC CGGCATGGTC 
GGCCCGAGCG ATGACAGCAA GAACGAGCAG AGCCATCTGC CGACCACGGA CGTGGCGCAG 
ATCCATCAGC TGGTGATCAA GGAAGCGCGT AATGGTCTGG AACAGGCCAA GGACGCGATC 
ATCGAGTTCA TCGCCTCGCA GTGGAACCAC GAGCATCTGG CCCGCGTGCC CGGCCTGCTG 
ACCCAGGTCC GTGGCGGCCT GGCGATGATT CCGCTGCAGC GTGCAGCCGA CCTGCTCAAC 
GCCTGCAATC GCTACATTCA GGAGCAACTG CTGGCATGCA AGGCCGTGCC CAACTGGCAG 
AGCCTGGACA CCCTGGCCGA TGCCATCACC AGCGTCGAGT ACTACCTCGA GCGTCTGGCC 
GAAGATCATG GCACTCAGGG CGATCTGATT CTCGATGTCG CCGAGGAGAG CCTGGAGACC 
CTGGGTTACC CGCTCAAGGA AAAACCCTCG ATTCTCGACC GCGTCGAATC GCAGGAAGAG 
AGCCTGGCAC CGCTGGCTGA CCCACTGCAG GAAATCGAAC TGCTCAGCGC CGAGGACGAA 
CAACTCGAAG AGCCGCTGGC CGAGATCGAG CCGCTGGCTC TCGAACCGGA TGAGCCTGCC 
AACGATATCG TTGTGGATTT GCCGTCTCTG GACGATGAGC CCGAGTTGCC GGCTACCAGC 
GAGAGTGCTG ACACGTTCAC CTTCGAGCTG GACGAACTCG AAGAGTTGCC CGCGCTACAG 
AGCGAAGAGA TCGTTGCCGC ACCCTTGCTC GATGCCGAGC AGGAACCTGC GCTGGAGCTC 
GAAGAACTGA GCCTGGACCT GCAGGCCGAG ACGCCGCAGT GGGACGAGCT TGAGCTGGCG 
GATCTGGATC TGCCAGAAGT CGAGCTGCCC AGCGCTCCCG AGAGCGTCCC TGAACTTGAC 
GCAGTGGCCG CCGAAAAGCC GCTGTCGATG GCCGATGTGA TGGCTGCCCC GGTGCAGGCG 
ATCAACCCGC CTGCCGCCGA CGTGCCGCCG AGCCTGCTGC CGCCGCCCGC GGATGAGGAG 
CCGGTGGACG ACGATCTGCT GGAGGTCTTC ATCGAAGAAG CCGGCGAAGT GCTGGAAACC 
ATCGCCGAGT ATCTGCCGCA GTGGCAGGCC GATACCGCCA ACAAGGAGGC GCTGGTCGAA 
GTGCGCCGCG CCTTCCATAC CCTAAAAGGC AGTGGACGTA TGGTGCGGGC GCTGGTGCTC 
GGCGAATTGG CCTGGTCCAT CGAGAACCTG CTCAACCGTG TGATGGATCG CAGCATCGAA 
CCGAGCGCCC CGGTGCAACA GGTGGTGCTG GATGTGGTCG CACTGATGCC GGCGCTGGTC 
GAAGAGTTTG CCGCCAAGGC GCAGCGCCAG CGTGATGATG TCGACCTGCT GGCCGCCACG 
GCTCATGCCC TGGCCAAAGG CCTGACGCCC CCAAAATCTA ACGCCCCGGC CGCCCAGCAG 
GTAGCCGAGC CCGTGGGCGT TGACGACGCT ACCGAGGTCG TCGCGCACGA CCAAGTGCCA 
GATGACGAGC CAATCGCCGG TGATTCCCCG ATTGATGAGC CCCTCGATGG CGAGCCCCTC 
GATCCACAGT TGCTGGAGAT TTTCCGCAAC GAAGCAGAGA CGCACCTGGA TACCCTGGTG 
GGCTTTCTCG CCGATTGCGC GCAGGAGTTG CCGCAACCGG TCACCGATAG CCTGCAGCGC 
GCGCTGCACA CCCTCAAGGG CAGTGCCTAC ATGGCCGGCA TCCTGCCAGT GGCAGAAATT 
GCCGCGCCGC TGGAGAAGCT GGTCAAGGAG TTCAAGACCA ACCTGATCCA GGTGGATCTG 
GCTGCCGCCG AGCTGCTCAG CACCGCTGAG GGATTGTTCC GCGCAGGCCT CGACAATCTG 
GAGAGCCAAC CGCTGGCGCC GATCCCCGGT GCCGAAGCCT TTCTGGCCCG CGTCCAGGCG 
CTGCATCAGG AACGTCTGGC CAGCGCCGAA GACGAGCGTC AGGCGCAGAG CGGCGAGACT 
CGCGATCCGC AACTGATTGG CATCTTCCTC GCCGAAGGCA TGGACATTCT GCTCGATGCC 
GAGGATCTGC TGCGCAAATG GCGTGAACAC CCCTCCGAGC GCCAGGAGCT GTCCGCACTG 
CTGGAGGAAC TCACCACCCT CGGCCGTGGC GCCGAAATGG CCGAGTTGCC GCAGGTCGAC 
GAACTGTGCG AAGCCCTGTT GGACCTGTAC GGCGCGGTCG AGGAAGGCAG CCTGGCGGTG 
AGCGAACGCT TCTTCGACGA AGCGGAAAAG GCCCATGAAG CCCTGATCGG CATGATGGAT 
CAGGTTGCCG CCGCCCTGCA GGTCAGCCCG CAGCCCGAGC GTGTGCAGGC GCTGCGCGAT 
CTGCTCAGCG AAGCCATCGA TCCCAATACC CTGGCCTTGC TGACGCCCGG CGCCGAGGGC 
ATGGAGATCA TCGAACTCGA TCAGGCCACT GCCGAGGCGG AACAGGCCCT GGCCGAACCG 
CACAGTGTCG AGCCGTTTGC CGAGGCGGAG AGCGTCGAGG ACGCGGGCGA AGCGCCGCAA 
GCGGAAGACG AATCGGCTGC GGCCTACGCC GATCTCGATG AGGAAATGGT GGAAATCTTC 
CTCGAAGAGG CCGTGGATAT TCTGGAAAGC GCCGCACAGG CGCTGGAGCG CTGGCTCGGT 
GAGCCGGACA ACACCCTGCC GCTGTCTGCG CTGCAACGCG ACCTGCATAC CCTCAAGGGT 
GGCGCGCGCA TGGCGGCGAT TCGTCCGATT GGCGACCTGG GGCACGAGCT GGAATCGCTC 
TATGAGGGGC TGGTTGATCG TCGTTACAGC CATTCCCCGG CCCTGGGTAC TCTATTGCAG 
CAGAGCCATG ACCGTCTGGC GCAGATGCTC GATCAACTGC AGGCGCGGCA GACGCTGGCT 
TCTGCCGATG AGCTGATTCT GGCAATCCGT CAGTTCCGCC ATGGTGGGGC GCCGCACAGT 
CTTTCGGCGG CTGTCGCTCA CGTCGAGCCC GCGCCTGAGA GCCCACTCAG CGAGCTGCCC 
GAACCTGAAG TCGAGCGTAT CGAGCTGCCG CCGCTGGCCT TGGTCGAAGA CGAGATCGTG 
TTCGACGAAG TCCCGGAGCC TGAAGCCCAG TCGCCCACTG TTGAGAGCGT CGAGCCGCCA 
CTGCCGCAAG CCCTGCCGGC TGTGGACGAA ACGCTGCCCG AGCCGCAGAG CATGACGCTG 
GCCAACTGGC ACGACGAGCG CGATCCTGAA CTGGTGGAAA TCTTCCTCGA AGAAGGTTTC 
GACATCATCG ACAGTGCCGG CGCCGCCCTG CAGCGCTGGA TGGCCAATGT CGACAACAGC 
ATCGAGCTGG AAGCCCTGCA GCGTGACCTG CACACCCTCA AGGGGGGGGC GCGCATGGCG 
GAAATCCGTG AAATCGGCGA CCTGGCGCAT GAGCTGGAGT TTCTTTACGA AGACCTCGGC 
GCTGGCCGTC TGCGCGCCAG TCCCGAGTTG TTCGGTCTGT TGCAGGCCTG TCATGACCGT 
CTGGCCGAGA TGCTCGATGC CGTGCGCGGC CAGCGTGTCG TGCCGCAAGG CACTGCCCTG 
ATCGAAACCA TCAAGCGCTT CCGGGGCAAC CCCAACGAAC AACTGAGCAT ACCGCAGGCG 
GTACAGCTCA AGGCCGTGGT CGACAGTGAT GCAGCCGAAG AGGCCGACAG CGACATTCTC 
GATATCTTCC TCGAAGAGGG CGACGACCTG CTCGAAGCCA TGGAAGCGGT CATTGGCCGC 
TTCGAGACGC AGCGTGATGA CGTCAGTGCC ATCGAAGAAA TGCAGCGTAT CCTGCATACC 
CTCAAGGGCG GCGCGCGTCT GGCCGGGCAG AAGCGTCTGG GCGATCTGAG CCATGACCTT 
GAGCAACACC TCACCGAGGC GCTGCAGCAG GGAGCACCCT GGCCGGAAAG TCTGTTCCTC 
GACGTGCAGT CCGGCTTTGA AGGGCTGCAG CAGGAGCTTG ATCTCCTGCG CCAGCGCTTG 
AGCGCCAGCC TTGCCGGTCA GGAGGAAGCA GCGCCTGTCT CCGAGGCCGA CCCTGGCGCC 
AATACGCTCA CCCCGTTGCT CAACCCGATC GTGGCCGCCA GTGATGTGCC GAGCCAGGTT 
CAGGCGCGCA AGGTGCTGCC GTTCGTGCAG CGCGCGCAGG AGGCTGCGCA GGAAGCCGCC 
GCGCGCCGTG CACCACAGGA ACTGGTCAAG GTGCCGGCCG AGTTGCTCGA AGGGCTGGTC 
AACCTGGCCG GTGAGACCTC GATTTTCCGT GGCCGTGTCG AGCAACAGGT GAGCGATGTC 
GGCTTCACCC TCAGCGAGAT GGAAGCGACC ATCGACCGCG TACGCGACCA GCTGCGCCGG 
CTCGATACCG AGACCCAGGC GCAGATTCTC AGCCGCTACC AGGCCGAGGC CGAGCGTGCC 
GGCTACGAGG ACTTCGATCC GCTGGAGATG GACCGCCACT CGCAACTGCA GCAGCTGTCC 
CGTGCGCTGT TCGAGTCCGC CTCCGACTTG CTCGACCTCA AGGAAACCCT GGCGGCGAAG 
AACCGCGACG CGGAGACCCT GCTGCTGCAA CAGGCACGGG TCAACACCGA GCTGCAGGAA 
GGTCTGATGC GCACCCGCAT GGTGCCGTTC GATCGTCTGG TGCCGCGTCT GCGCCGCATC 
GTGCGTCAGG TCGCCGGCGA GCTGGGCAAG CAGGTCGAGT TCGTCGTCGG CAACGCCGAA 
GGGGAAATGG ACCGCACCGT GCTCGAGCGC ATCGTCGCGC CGCTGGAACA CATGCTGCGC 
AACGCCGTCG ACCATGGCAT CGAGCAGGCC GAGGTACGCC GCGCAGCCGG CAAGCCGGAT 
ACCGGCACCA TTCGCCTCAA CCTGGGGCGT GAGGGGGCCG ATATCGTCCT GACTCTGGAC 
GATGACGGCG CAGGTATTCG CCTGGATGCC GTACGCCGTA AAGCCATCGA ACGTGGCCTG 
ATGGATGCCG ACAGTGACCT CAGTGATCAT GAGGTGCTGC AGTTCATCCT CGAAGCCGGT 
TTCTCCACGG CCGAGAAGGT CACGCAGATT TCCGGGCGTG GCGTCGGCAT GGACGTGGTG 
CACTCGGAGG TCAAGCAACT GGGCGGCTCG ATGAGCATCG AGTCGAGCCT CGGCCAGGGC 
ACGCGCTTCA CCATCCGCCT GCCGTTCACC GTGTCGGTCA ACCGTGCGCT GATGGTGTAC 
TCCGGCGAAG ACCTGTATGC CATTCCGTTG AACACCATCG AAGGTATCGT GCGGGTTTCG 
CCGTTCGAGC TGGAGGCTTA TTACGCGCCC GATGCACCGC GCTTCGAGTA CGCCGGCCAG 
ACTTACGAGC TGAAGTACCT GGGCGACCTG CTGAACAACG GTCAGCAGCC CAAGCTGGTA 
GGCCAGAGCC TGCCGCTGCC GGTGATCCTG GTGCGCTCCA GCGAGCATGC CGTGGCGGTG 
CAGGTGGACA GCCTGGCCGG TTCGCGCGAG ATCGTGGTCA AGAGCCTTGG CCCGCAGTTC 
GCCGGGGTGC ACGGGATCTC CGGTGCAACC ATCCTCGGTG ACGGTCGCGT GGTGGTGATT 
CTCGACCTGC TGGCAACCAT TCGTGTGCGG CATGCACATC TGCAGAATCA GCTGATGCCG 
CGCCTGGCTT CGCGTCAGGC GGCCAATGAA GAGGTCGAGG CCGACCGGCC GCCGCTGGTC 
ATGGTGGTGG ACGACTCGGT CACCGTGCGC AAGGTCACCA GCCGTTTACT CGAGCGTAAT 
GGCATGAACG TGGTCACCGC CAAGGATGGG GTCGATGCCA TCGCCCAGCT GCAGGAGCAC 
AGGCCCGACA TCATGCTGCT GGACATCGAG ATGCCGCGCA TGGACGGCTT CGAGGTGGCC 
ACGCTGGTGC GCCACGATGA GCGCCTCAAG GATCTGCCGA TCATCATGAT CACTTCGCGT 
ACCGGCGAGA AGCACCGCGA GCGGGCCATG TCCATCGGCG TCAATCAGTA CCTCGGCAAG 
CCCTATCAGG AGTCCTTGCT GCTCGACACC ATCGCTCAAC TGGTGGGTAG CCATCGGGTC 
AAACGGACAT GA 

 

Protein sequence

MSGVAMGDRH DYVALEWVKG EIGETLKQAR QALEAFVENP QDPTRMRFCL TYVHQVHGTL 
QMVEFYGAAL LAEEMEQLAK ALMEGRVANQ GEALEVLMQA ILQLPVYLDR IQTARRDLPM 
VVLPLLNDLR AARGEKLLSE TSLFSPDMSA RMPALPEGSM VRLRTAELPV LLRKLRQMLQ 
MALVGVIRNQ DLATNLGYMA RVFARLETLC QDAPLGGLWQ IASGMVEGLA NGSVVNGTSV 
RTLLRQVDKE LKRLVEQGAD GINQSAPDEL TKNLLFYVAK SPAQSPRIRA LKEQYRLDEA 
LPDTDVVDEE RARLAGPDRD AMRSVVAALC EELVRVKDSL DLFVRSDRTQ PGELDALLAP 
LKQIADTLAV LGFGQPRKVI LDQIDVVHSL SLGQREPNDA VLMDVAGALL YVEATLAGMV 
GPSDDSKNEQ SHLPTTDVAQ IHQLVIKEAR NGLEQAKDAI IEFIASQWNH EHLARVPGLL 
TQVRGGLAMI PLQRAADLLN ACNRYIQEQL LACKAVPNWQ SLDTLADAIT SVEYYLERLA 
EDHGTQGDLI LDVAEESLET LGYPLKEKPS ILDRVESQEE SLAPLADPLQ EIELLSAEDE 
QLEEPLAEIE PLALEPDEPA NDIVVDLPSL DDEPELPATS ESADTFTFEL DELEELPALQ 
SEEIVAAPLL DAEQEPALEL EELSLDLQAE TPQWDELELA DLDLPEVELP SAPESVPELD 
AVAAEKPLSM ADVMAAPVQA INPPAADVPP SLLPPPADEE PVDDDLLEVF IEEAGEVLET 
IAEYLPQWQA DTANKEALVE VRRAFHTLKG SGRMVRALVL GELAWSIENL LNRVMDRSIE 
PSAPVQQVVL DVVALMPALV EEFAAKAQRQ RDDVDLLAAT AHALAKGLTP PKSNAPAAQQ 
VAEPVGVDDA TEVVAHDQVP DDEPIAGDSP IDEPLDGEPL DPQLLEIFRN EAETHLDTLV 
GFLADCAQEL PQPVTDSLQR ALHTLKGSAY MAGILPVAEI AAPLEKLVKE FKTNLIQVDL 
AAAELLSTAE GLFRAGLDNL ESQPLAPIPG AEAFLARVQA LHQERLASAE DERQAQSGET 
RDPQLIGIFL AEGMDILLDA EDLLRKWREH PSERQELSAL LEELTTLGRG AEMAELPQVD 
ELCEALLDLY GAVEEGSLAV SERFFDEAEK AHEALIGMMD QVAAALQVSP QPERVQALRD 
LLSEAIDPNT LALLTPGAEG MEIIELDQAT AEAEQALAEP HSVEPFAEAE SVEDAGEAPQ 
AEDESAAAYA DLDEEMVEIF LEEAVDILES AAQALERWLG EPDNTLPLSA LQRDLHTLKG 
GARMAAIRPI GDLGHELESL YEGLVDRRYS HSPALGTLLQ QSHDRLAQML DQLQARQTLA 
SADELILAIR QFRHGGAPHS LSAAVAHVEP APESPLSELP EPEVERIELP PLALVEDEIV 
FDEVPEPEAQ SPTVESVEPP LPQALPAVDE TLPEPQSMTL ANWHDERDPE LVEIFLEEGF 
DIIDSAGAAL QRWMANVDNS IELEALQRDL HTLKGGARMA EIREIGDLAH ELEFLYEDLG 
AGRLRASPEL FGLLQACHDR LAEMLDAVRG QRVVPQGTAL IETIKRFRGN PNEQLSIPQA 
VQLKAVVDSD AAEEADSDIL DIFLEEGDDL LEAMEAVIGR FETQRDDVSA IEEMQRILHT 
LKGGARLAGQ KRLGDLSHDL EQHLTEALQQ GAPWPESLFL DVQSGFEGLQ QELDLLRQRL 
SASLAGQEEA APVSEADPGA NTLTPLLNPI VAASDVPSQV QARKVLPFVQ RAQEAAQEAA 
ARRAPQELVK VPAELLEGLV NLAGETSIFR GRVEQQVSDV GFTLSEMEAT IDRVRDQLRR 
LDTETQAQIL SRYQAEAERA GYEDFDPLEM DRHSQLQQLS RALFESASDL LDLKETLAAK 
NRDAETLLLQ QARVNTELQE GLMRTRMVPF DRLVPRLRRI VRQVAGELGK QVEFVVGNAE 
GEMDRTVLER IVAPLEHMLR NAVDHGIEQA EVRRAAGKPD TGTIRLNLGR EGADIVLTLD 
DDGAGIRLDA VRRKAIERGL MDADSDLSDH EVLQFILEAG FSTAEKVTQI SGRGVGMDVV 
HSEVKQLGGS MSIESSLGQG TRFTIRLPFT VSVNRALMVY SGEDLYAIPL NTIEGIVRVS 
PFELEAYYAP DAPRFEYAGQ TYELKYLGDL LNNGQQPKLV GQSLPLPVIL VRSSEHAVAV 
QVDSLAGSRE IVVKSLGPQF AGVHGISGAT ILGDGRVVVI LDLLATIRVR HAHLQNQLMP 
RLASRQAANE EVEADRPPLV MVVDDSVTVR KVTSRLLERN GMNVVTAKDG VDAIAQLQEH 
RPDIMLLDIE MPRMDGFEVA TLVRHDERLK DLPIIMITSR TGEKHRERAM SIGVNQYLGK 
PYQESLLLDT IAQLVGSHRV KRT