| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0361 |
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| Symbol | |
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| ID | 5108283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 372096 |
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| End bp | 375860 |
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| Gene Length | 3765 bp |
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| Protein Length | 1254 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640501577 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001185866 |
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| Protein GI | 146305401 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACCG CTTTTTCCCA CCGCCTGCCC AGATGGAGCT GGTGGCTGCC GCTACCGCTT
TTCCACTTGG GAACCTGGAT TTCTCTGGCC ACCCGCCTGA ACGACGGGGT GGCCCTGTGT
TACCTGCCGC TGGTGCTGGG CCTGGTGCTG TGCCTGTGGT GGGGCCCGCG CGTGCTGCCG
GCGCTCTACC TCAACGCCCT GCTCAGCGTC CCGTTGTGGG GCCTGCCCTG GCAATGGGCG
CCGCTGTATG CCTTGCCCGA GACGGTCGCC GTGGCGCTGG GCTGGTGGTT GTTGCGACGC
CACAGCTTCG ACCCGGCCTT GGGCAGCCTG GCCGATCTGC TGCGTTTTCT CGCATTCGGC
GTGCTGGCGC CGGCGGCGCT GGTGGCGTTG GGGTTGCAGG CCAACCTGTG GCTGACCGGC
TTGCAGCTCG GCGAGCACTG GGCGCAGGCC AGCCTGGCGG TGTGGCTGAA CGACGCCATC
AACCTGCTGG CGCTGGCCAC CCCGCTGCTG GTGTTCGGCA GCCCGCTGCT GCGTGCGCGC
GGCTGGCTGC CCGAGAGCAC GGCGGCCGAC GCGCAAGCCC TGAGCATCAG CCGTTCCTGG
CGCGGCTGGC TGCTCGCGTT CGGCATCTTC CTGGCGCTGA TGGCACTGGT CGGCAGCCTG
CCTCTGCTGG TCGCTCTGCC CTTTCTCGGC ATCGGCATGC TCGCCCTGGC CCTGCGTTAT
GCCTTCGCCG GTGCGCTTTA CGGCGCCGTT CTGGTGTTCG CCGCGACCCT GCCGCTGCCG
TTGCTGCGCG GCGATCCCGG TTTCGCCATG CTGGATCTGC CGCGCAGCCA GTTGCAGCTG
GCCGTGCTGC TGCTGATGGG CGCCGCCCTG CTGGTAGGGC GGGCCCTGGG TGACCTGCGC
CAGGCGCTGA GCCGCAGCGC GCGCATGCAG CAGCAACTGG CCCGCGCCAA CCTGGCGATG
GAGGCCAGCC CGCTGGGGGT GACCATCGCC GACGCCCGCC AGCCGGACCT GCCATTGGTC
TACTGCAACG CCGCCTTCAC CCAGATCACC GGCTACAGCG CAGACGAGAC ACTGGGGCGC
AACTGCCGCT TTCTCGTTGC CGACGACCAC GCCCAGCTGG AGCTGCAGCC CCTGCGCAGC
GCCTTGCGCG AAGGGCGCAG CGGGCATGCG GTGGTGCGCA ACTACCGCAA GGACGGCCGG
CCGTTCTGGA ACGAAGTGGT GCTGGCGCCG ATGCGCGACG AGCGGGGCAT CAGCCATTTC
GTCGGCCTGC AGCAGGATGT CACCGAACGC GTGGAGCTGG CGGCGCAGGT CGAGCAGCAG
CGCGCGCAGC TGTTGCGCCA GAACCACCTG TTCAGCCAGA CCGAGGACAT CGCCAACCTC
GGCGGCTGGG TGTTCGAACT CGGCGATTCC AGCATGTTCT GGAGCGATGG CTGCTATCGC
ATCGTCGAGC GCGACATCCA TCTGGGGCCG CCGAGTTTCG AGCAGGCGCT GCACTACTAC
GACGCGCCGA GCCAGACGCT GATCATCGAG ACCCTGCAGG CGGCGCTGGG CGGGCTGGAT
GAGGTCGATG TGGAGCTGCG TCTGGCGGCG CGCCTCGGCG GGCGCCTGGT GCGGGTGCGC
GGCATGGCCG AGCGCGACGA TGACGGCAGC CTGGTGCGGG TGTACGGCGT GGTGCAGGAC
ATCAGCGAGC GCAAGCGCAC CGAGTCGCAA CTGCGCGAGC GCGACGAGCG CCTGCGTCTG
TTCTTCGAGG CGCCGCTGAT CGGCATGGCG CTGACTACCC AGAGCTTCGG CTGGGAAGAG
GTCAACCAGA AGCTGTGCAG CATCCTCGGG CGTAGCCGCG ACGAGCTGAT GGCCAGCAGC
TGGCACCAGC TGTCGCATCC CGACGACCTG GCAGGCGAAC AGGCCAGGCT CGAGGAGGTG
CTGCTGGGCA GCAGCGACGG TTTCGAGATG GACAAGCGCT TCCTGCGGGC CGACGGCCAG
GTGGTGTTCA CTCGCCTCAG TCTGCGTGCG GTCCGCGGCG GCGCAGGCCG GCAGACGCTG
TTTCTGCTGC TGGTGGAAGA CACCAGCGCG CGGCGCGAGG CCGAGGCGCG TTACCACACC
CTGGTCGAGC ACGCGCCCGA GGCGATCCTG CTGTTCAGCC CGGAGGGCGG CATCGTCGAG
TGCAACGAGA ACGCGCTGCA GCTGCTGCGT TACCGCCGCG AAGACCTGCT GGGCAAGACC
ATCCAGAGCA TCAGCCCGCC GCGCCAGGCG GACGGCAGTC TGTCTTCGCG CACCGGCAGG
GAGCATCTGC AGCGGGCCAT CGCCGGTGAC ACGCCGGTGT TCGAGTGGAC CCATCGCGAC
AGTGCCGGAC GCCAGCTGCC ATGCGAGGTG CGCCTGGTGC GCATGCCCGG CGAGGAGCTG
CTGATCCGCG CCAGCGTGCT CGACATTTCC GAGCGTCAGC GCTACCAGCG CGAGATCGAG
CGGCTGGCCT ACAGCGACGA GCTGACCGGT CTGCCCAATC GCCGTCTGCT GCTCGATCGC
CTGCAGCACG CCATGGATCG CGAGAACCGC GAAGGCAGCC TGGGCGCGCT GCTGTTCATC
GACCTGGACC ACTTCAAGAC GGTCAACGAC AGCCTCGGCC ACCTGATCGG CGATGCGCTG
CTGTGCGAAG TCACCACCCG CCTGGCTCGT GAGCTGCGTA CCGAAGACAC CCTGGCGCGC
CTCGGCGGCG ACGAGTTCGT GGTGCTGCTC GAGGCGCTGG GTAGCGAGCC GCAGGCCGTT
GCCGAGCATG CCGCCGCGGT GGGCGAGAAG CTGCTGCGCG GGCTGCAGGG CAGTTGCCTG
ATCGAGGGGC ACGAGCTGGC CATCAGCGCC AGCATCGGCA TCGCCCTGCA TCCGCTGGGC
CTGCAGCGCG CCGCCGATAT CCTCAAGCAG GCCGACACCG CCATGTACCG GGCCAAGCAT
GCCGGACGCA ATGCGCTGCA CTTCTTCGCC CCGGAGATGC AGGCGGCCAT CGATCAGCGT
CTGCAGCTGC AGGGCGAGCT GCGCCAGGCC ATTGCCCGTC AGCAATTGCA ACTGGTGTTC
CAGCCGCAGC TGGTCCTGGC CGACGACACG GTGGCTGGCG CCGAGGTGCT GCTGCGCTGG
CTGCACCCCG AACGCGGCGA GATTTCCCCC GACCAGTTCA TTCCGCTGGC CGAGGAGACC
GGGCTGATCC AGGACATCGG CCAGTGGGTG CTGGAGCAGT CCTGCGCGAC GCTGGCGCGC
TGGCAGGCGC AATGGCCGCA ACTGGTGCTG GCGGTCAATC TCAGCCCGCG CGAGTTGCGC
CAGGCCGGTT GCGTGGCGCG CGTCGAGGAT TGCCTGCGTC GCCATGGCGT ACCTGCGCAG
GCGCTGGAGC TGGAAATCAC CGAGGGCGTG CTGCTGGAGG ACGTCGACCG CTGCATCGGC
AACATGCAGC AGCTCAAGGC GCAGGGCGTG CGTTTTGCCA TCGACGACTT CGGCACGGGC
TACTCGTCGC TCACCTACCT CAAGCGCCTG CCGCTGGACC GCCTGAAGAT CGACCGCAGC
TTCGTTGCCG ATCTCGATGG CGACGCCAGC GGGCGCATGC TGGTGCAGAC CATCCTGATG
ATCGCGCGCA ACCTGGATCT CGAATGCGTG GCCGAGGGCA TCGAGCAGCC CAGCCAGTTG
GCGCTGCTGC GTGAGCAGGG CTGCGCGCTG GGCCAGGGCT ATCTGTTCGG CAAGCCGATG
GTCGAGGCCG AGTTTCTCGC CTGGCTGCAG GCGCGCCAGG GCTGA
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| Protein sequence | MPTAFSHRLP RWSWWLPLPL FHLGTWISLA TRLNDGVALC YLPLVLGLVL CLWWGPRVLP
ALYLNALLSV PLWGLPWQWA PLYALPETVA VALGWWLLRR HSFDPALGSL ADLLRFLAFG
VLAPAALVAL GLQANLWLTG LQLGEHWAQA SLAVWLNDAI NLLALATPLL VFGSPLLRAR
GWLPESTAAD AQALSISRSW RGWLLAFGIF LALMALVGSL PLLVALPFLG IGMLALALRY
AFAGALYGAV LVFAATLPLP LLRGDPGFAM LDLPRSQLQL AVLLLMGAAL LVGRALGDLR
QALSRSARMQ QQLARANLAM EASPLGVTIA DARQPDLPLV YCNAAFTQIT GYSADETLGR
NCRFLVADDH AQLELQPLRS ALREGRSGHA VVRNYRKDGR PFWNEVVLAP MRDERGISHF
VGLQQDVTER VELAAQVEQQ RAQLLRQNHL FSQTEDIANL GGWVFELGDS SMFWSDGCYR
IVERDIHLGP PSFEQALHYY DAPSQTLIIE TLQAALGGLD EVDVELRLAA RLGGRLVRVR
GMAERDDDGS LVRVYGVVQD ISERKRTESQ LRERDERLRL FFEAPLIGMA LTTQSFGWEE
VNQKLCSILG RSRDELMASS WHQLSHPDDL AGEQARLEEV LLGSSDGFEM DKRFLRADGQ
VVFTRLSLRA VRGGAGRQTL FLLLVEDTSA RREAEARYHT LVEHAPEAIL LFSPEGGIVE
CNENALQLLR YRREDLLGKT IQSISPPRQA DGSLSSRTGR EHLQRAIAGD TPVFEWTHRD
SAGRQLPCEV RLVRMPGEEL LIRASVLDIS ERQRYQREIE RLAYSDELTG LPNRRLLLDR
LQHAMDRENR EGSLGALLFI DLDHFKTVND SLGHLIGDAL LCEVTTRLAR ELRTEDTLAR
LGGDEFVVLL EALGSEPQAV AEHAAAVGEK LLRGLQGSCL IEGHELAISA SIGIALHPLG
LQRAADILKQ ADTAMYRAKH AGRNALHFFA PEMQAAIDQR LQLQGELRQA IARQQLQLVF
QPQLVLADDT VAGAEVLLRW LHPERGEISP DQFIPLAEET GLIQDIGQWV LEQSCATLAR
WQAQWPQLVL AVNLSPRELR QAGCVARVED CLRRHGVPAQ ALELEITEGV LLEDVDRCIG
NMQQLKAQGV RFAIDDFGTG YSSLTYLKRL PLDRLKIDRS FVADLDGDAS GRMLVQTILM
IARNLDLECV AEGIEQPSQL ALLREQGCAL GQGYLFGKPM VEAEFLAWLQ ARQG
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