Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0345 |
Symbol | |
ID | 5110314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 353332 |
End bp | 354426 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640501561 |
Product | extracellular solute-binding protein |
Protein accession | YP_001185850 |
Protein GI | 146305385 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.742207 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCGTT CTATCCTGCT GGCCGGCCTT GTCGCCGCCG CCATTGGCAT GTCCGCAGCC CAGGCGGCCA ATCGTGTGGT CAAGGTCTAC AACTGGTCCG ACTACATTGC GCCGGACACC ATCGCCGAGT TCGAGAAGGA AACCGGCATC AAGGTGGTGT ATGACGTTTT CGACTCCAAC GAAACCCTCG ATGGCAAGCT GGCCACCGGC CAGAGCGGCT ACGACGTGGT GGTACCCACC AACCACTACC TGGCCAAGCA GGTGCGTGCC GGCACCTATC TGAAGCTGGA CAAATCCAAG CTGCCGAACC TGGTCAATCT CGACCCGACC ATCATGCAGA ACCTGGCCGC GGGCGACCCC GGCAACGAAT ACTCGGTGCC TTATCTGTGG GGCACCAACG GCATTGGCCT GAACGCCACC AAGGCCCGTG CCGTGCTCGG CGAAGATGCC CCGCTGGATT CCTGGGCCCT GCTGTTCGAG CCGCAGTACG CCGAGAAGCT GGCGAAATGC GGCATCGCCC TGCTCGACTC GGGCGACGAA GTGCTGCCGC AGACGGTCAA CTACCTGGGC CTGTCGCCGC ACACCACCAA GCGCGAAGAC TACGACAAAG CCTTCGAGCA GATGATGAAG GTGCGCCCGT ACATCACCTA CTTCCACAGC TCCAAGTTCA TCTCCGATCT GGCCAATGGC GAGATCTGCG CCGCCTTCGG CTACTCCGGC GATGTGCTGC AGGCCGCCGA CCGTGCCGAA GAGGCCGGCC GCAGCGACGA GATCATCTAC ATCATTCCCA AGGAAGGCAC CGCGATGTGG GCCGACCTGC TGGCGATTCC CAAGGACGCG AAGAACGTCG ATGAGGCGCA TGCCTTCATC AACTACCTGC TGCGCCCGGA CGTGATCGCC AAGATCAGCA ATTACGTGGC CTACGCCAAC CCCAACCTCA AGGCCACCGA GCTGGTCGAC GAAGGCGTGC GCGAGAATCC GGGCGTGTAT CCCAGCGCGG AGGTCATGGC CAAGCTCTAC GTTGCCGAGG AACGTACCCC CGAGGTGCAG CGCTGGCTGA CCCGTGACTG GACGCGAATC AAGAGCGGAC GCTGA
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Protein sequence | MRRSILLAGL VAAAIGMSAA QAANRVVKVY NWSDYIAPDT IAEFEKETGI KVVYDVFDSN ETLDGKLATG QSGYDVVVPT NHYLAKQVRA GTYLKLDKSK LPNLVNLDPT IMQNLAAGDP GNEYSVPYLW GTNGIGLNAT KARAVLGEDA PLDSWALLFE PQYAEKLAKC GIALLDSGDE VLPQTVNYLG LSPHTTKRED YDKAFEQMMK VRPYITYFHS SKFISDLANG EICAAFGYSG DVLQAADRAE EAGRSDEIIY IIPKEGTAMW ADLLAIPKDA KNVDEAHAFI NYLLRPDVIA KISNYVAYAN PNLKATELVD EGVRENPGVY PSAEVMAKLY VAEERTPEVQ RWLTRDWTRI KSGR
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