Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0085 |
Symbol | |
ID | 5106270 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 79640 |
End bp | 80740 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640501301 |
Product | TRAP dicarboxylate transporter- DctP subunit |
Protein accession | YP_001185591 |
Protein GI | 146305126 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGTC GCGACATACT CGCCGCAGCC GGTGTTGGCC TGGCAGCCAC CGCACTGGTG GGCTGCAAAG AAGAGGCAAA AAGCGCCGCT GCGCCCCAAG AGGGCTCGAG TTCCCAGACC TTCAACTGGA AGATGGTCAC CTCCTGGCCG AAGAACTTCC CAGGCGTCGG CGTCGGCGCC GAGCGCTTCG CCAAGCTCGT CGAGGAGATG AGCAACGGCC GTCTGAAGAT CAAGGTCTAC GCCGCCGGCG AGCTGGTTCC GGCGCTGGAA GTGTTCGATG CAGTCTCCCG CGGCACCGCC GAAATGGGTC ACGGCGCGCC GTACTACTGG AAGGGCAAGG TCCCGGCCGC GCAATTCTTC TGCGCCTCGC CGTTCGGTCC CAACGCCCAG GAAATGAACG CCTGGCTGCA CCGCGGCGGC GGTCAGCAGC TGTGGGAAGA GGTGTACAAG CCGTTCGGCG TCCTGCCCAT GGCCTGCGGC AACACCGGCG TGCAGACCGC CGGCTGGTTC AACAAGGAAA TCAACTCGGT CGACGACTTC AAGGGCCTGA AGATGCGCAC CCCCGGCCTG GGCGGCGAAG TGCTGACCAA GATGGGCGGT ACCGTGGTCA ACATGCCGGC CGGCGAGATC TTCACTGCCA TGCAGACCGG CGCCATCGAC GCCACCGAGT GGATCGGCCC GTACAACGAC CTGGCCCTGG GTCTGCACAA GGCTGCCAAG TACTACTACA CCCCGGGCTG GCAAGAGCCG AGCGTACTGT TCGAGCTGGA CGTCAACCTC AAGGCCTGGG ACACCCTGCC GGCCGACCTC AAGGCCATCG TTCGTGCCGC CGCTCGCGAC GTCAACGGCG ACATGCTCGA CGACTACAAC GCCAAGAACA TGGAAGCCAT GGAACAGCTC AAGGCCGATG GCGTGGAAGT CCGCCGCCTG CCGGACGAAG TCCTGGCCCG CCTGAAGGAA GTGGCAGCCG AGGTGGTCGA TGCCAGCGCC GCGGCCGACC CGGCAGCGAG CAAGGTCTGG GAACACCAGA AGGCCTACCT CAAGCGCCTG TACGAATACG CCGAAAGCAA CGAGAAGGAC ATCTACAACA TCCGCGGCTG A
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Protein sequence | MKRRDILAAA GVGLAATALV GCKEEAKSAA APQEGSSSQT FNWKMVTSWP KNFPGVGVGA ERFAKLVEEM SNGRLKIKVY AAGELVPALE VFDAVSRGTA EMGHGAPYYW KGKVPAAQFF CASPFGPNAQ EMNAWLHRGG GQQLWEEVYK PFGVLPMACG NTGVQTAGWF NKEINSVDDF KGLKMRTPGL GGEVLTKMGG TVVNMPAGEI FTAMQTGAID ATEWIGPYND LALGLHKAAK YYYTPGWQEP SVLFELDVNL KAWDTLPADL KAIVRAAARD VNGDMLDDYN AKNMEAMEQL KADGVEVRRL PDEVLARLKE VAAEVVDASA AADPAASKVW EHQKAYLKRL YEYAESNEKD IYNIRG
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