Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0061 |
Symbol | aroE |
ID | 5106246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 57317 |
End bp | 58138 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640501277 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_001185567 |
Protein GI | 146305102 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCGCT ACTGCGTCTT CGGCAACCCC ATCGGCCACA GCAAATCGCC GCTGATCCAC CGTCTGTTCG CCGAGCAGAC CGGCCAGGTG CTGACCTACG AAGCGCGGCT GGCGCCGCTG GACGATTTCA TCGGTGACGC GCGCGCCTTC TTCGCCGAGG GGCTGGGCGC CAACGTCACC GTACCGTTCA AGGAAGAGGC CTTTCGCCTG GCCGACGAGC TGAGCGAGCG CGCCCGCCGC GCGGGCGCGG TGAACACCCT GAAGAAGCTG GAAGGTGGCC GCCTGCTCGG TGACAACACC GACGGTGCCG GATTGACCCG CGACCTGCAG GACAATGCCG GCTTCGCCCT GACCGGCAAG CGCATCCTCG TGCTCGGGGC CGGCGGCGCC GTGCGCGGCG TGCTCGAACC CTTCCTGGCG CAGAAGCCGG CCGTGCTGGT GATCGCCAAC CGCACCGTGG CCAAGGCCGA GCAGCTGGTG CGCGAATTCG CCGACCTCGG CCCGCTGGTC GCTGCCGGTT TCGACTGGCT CGACGCGCCG GTGGACCTGA TCGTCAACGG TACCTCGGCC AGCCTCGGTG GCGAGCTGCC GCCGATCGCA CCGAGCCTGA TCCAGCCGGG CCATACGCTT TGCTACGACA TGATGTATGG CAAGGAGCCC ACCGCCTTCA ACCGCTGGGC CTTTGATCAG GGCGCGGCGC GCTGCCTGGA CGGCCTCGGC ATGCTGGTCG AGCAGGCCGC CGAAGCATTC GAGCTATGGC GCGGCGTGCG CCCGAACACC GCGCCGGTGC TGGCCGAATT GCGCCGCCAG CTGGCGGGCT GA
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Protein sequence | MDRYCVFGNP IGHSKSPLIH RLFAEQTGQV LTYEARLAPL DDFIGDARAF FAEGLGANVT VPFKEEAFRL ADELSERARR AGAVNTLKKL EGGRLLGDNT DGAGLTRDLQ DNAGFALTGK RILVLGAGGA VRGVLEPFLA QKPAVLVIAN RTVAKAEQLV REFADLGPLV AAGFDWLDAP VDLIVNGTSA SLGGELPPIA PSLIQPGHTL CYDMMYGKEP TAFNRWAFDQ GAARCLDGLG MLVEQAAEAF ELWRGVRPNT APVLAELRRQ LAG
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