Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0039 |
Symbol | |
ID | 5106713 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 37328 |
End bp | 39412 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640501255 |
Product | HrcV family type III secretion protein |
Protein accession | YP_001185545 |
Protein GI | 146305080 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4789] Type III secretory pathway, component EscV |
TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGAGCGG TCATCGATTT TCTGAACGGT ATCGCGCTGG CTGCCATGCG CCGCTCGGAG ATCGTCGGCG CCTTCGTGGT CATCGCCATC ATCTTCATGA TGATCACGCC GATGCCCACG GAGCTGATGG ATGTGCTGAT CGCGATCAAT ATCTGCATTT CCTGCCTGAT GATCATGCTG GCCATGCATC TGCCCCGGCC CCTGGCGTTC TCGACGTTTC CGGCGGTGCT GCTGCTGACC ACCATGTTTC GCCTGGCCCT GTCGATCTCC ACCACGCGCC TGATCCTGCT CGAGCAGGAC GCCGGGCACA TCGTCGAGGC ATTCGGCGAG TTCGTCGTGG GTGGCAACCT GGCCGTCGGC GTGGTGATAT TCCTGATCCT GACCATCGTC AACTTCCTCG TCATCACCAA GGGCTCGGAG CGGGTGGCGG AGGTCGGCGC GCGCTTTACC CTGGACGCCA TGCCCGGCAA GCAGATGTCC ATCGACAGCG ATCTGCGCGC CAACCTCATT TCGGTGAGCG AGGCGCGTAA CCGCCGGGCC GAACTGAACA AGGAAAGCCA GCTGTTCGGC GCCATGGATG GGGCGATGAA GTTCGTTAAC GGCGATGCGA TCGCCAGCCT GATCATCATC GCCATCAACA TGATCGGCGG TATGGCCATC GGCGTGGCGC AAATGGGGAT GAGCGCGGGC GATGCCTTGC AGGTGTACAC CATCCTCACC ATTGGTGATG GCCTGGTTTC GCAGATCCCG GCGCTGATGA TTTCTGTCAC CGCCGGTATC GTCATCACCC GGGTGCCCAA CGAGCAGAGG CAGCAGACCA ACATCGGCCG GGAGATCGCC GAGCAGCTGA CCAGTCAGCC CAAGGCCTGG ATCATCGCCT CGGTGGCCAT GCTCGGTTTC GCCGCATTGC CGGGCATGCC CACCCTGACC TTCATCATCA TCGCCATCAT CTGTGGTTGC GGCGGCTTGT TGCAGTTGCA ACGTGCGCGT ACTTCCAGTG CGGCGGAGGA TGATCCGGAA GTCATCCCTC CGGAGATGAA TGGTCAGGAG GACCTGCGTA CCTTCTCGCC AAGTCGTCAG TTCGTGCTGC AATTTCATCC CAGCCAGGAT GCGCATCAGG TCGCGGCCCT GCTCAGCGAG ATTCGCCAGC GGCGCAACAG GCTGGTGGTG CAGTACGGCC TCACGTTGCC CTCGTTCATC ATCGAACAAT CGCCGCTCCT GCCTCCGGAC GAATTCCGTT TCTCGGTTTA CGAGGTGCCT CTGTTCAAGG CCACGCTGAC GCAAAGCCAG TTGGCCGTGC CCGCACGCAG TCTGCCACCG GGGGCTGTTT GCGGTTCCAA CGAGCGTCAG GAGGAAGACT GGGTATGGAT GCCGGCCGAT GATCCCATGC TGCAGAACGA CGAGTTGGAG ATCGTCAGCG CCGCGACGCT GATCGTCGAG CGCATGGAGC GTGCCATGCA GGCCTGCGGG CCGCAGTTCA TCGGCTTACA GGAAACCAAG GCGATCCTCG GCTGGCTGGA ATCGGAGCAG CCCGAGCTTG CCCAGGAAAT GCAGCGGGTA CTGCCCTTGG CCAGGTTTTC CGCGATTCTC CAGCGTCTGG CCGCCGAATG CGTGCCGCTG CGCTCCGTTC GCCTGATCGC GGAGACCCTG ATCGAGCACG CCCAGCACGA GCGAGATGTG ACTGTGCTGA CCGACTACGT ACGCATCGCC CTCAAGTCGC AGATCTACCA CCAGTACTCG AGCGCGGAGG GCTTGCTGGT GTGGCTGCTG ACCCCGGAAA GCGAAGGCAT CCTGCGTGAC GGCTTGCGTC AGACCCAGAC CGAGACCTTC TTCGCCCTGA ACCATGAAAC CAGCCAGCTA CTGCTGCAAC AACTGCACAT GGCCTTTCCG ATGCGGGCGC CTGAGCAGGC GGTGCTGCTG GTGCCGCAGG ATCTGCGCAG CCCACTGCGC ACGCTGCTGC AGGAGGAGTT TCACCATGTG CCGGTGCTGT CCTTCGCTGA AATCAGCAGC GCTGCTCGGA TCAAGGTAAT GGGTCGATTC GACCTGGAAG AGTCGGTGGC GCTGGACAAT GACTACGCCG CTTGA
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Protein sequence | MGAVIDFLNG IALAAMRRSE IVGAFVVIAI IFMMITPMPT ELMDVLIAIN ICISCLMIML AMHLPRPLAF STFPAVLLLT TMFRLALSIS TTRLILLEQD AGHIVEAFGE FVVGGNLAVG VVIFLILTIV NFLVITKGSE RVAEVGARFT LDAMPGKQMS IDSDLRANLI SVSEARNRRA ELNKESQLFG AMDGAMKFVN GDAIASLIII AINMIGGMAI GVAQMGMSAG DALQVYTILT IGDGLVSQIP ALMISVTAGI VITRVPNEQR QQTNIGREIA EQLTSQPKAW IIASVAMLGF AALPGMPTLT FIIIAIICGC GGLLQLQRAR TSSAAEDDPE VIPPEMNGQE DLRTFSPSRQ FVLQFHPSQD AHQVAALLSE IRQRRNRLVV QYGLTLPSFI IEQSPLLPPD EFRFSVYEVP LFKATLTQSQ LAVPARSLPP GAVCGSNERQ EEDWVWMPAD DPMLQNDELE IVSAATLIVE RMERAMQACG PQFIGLQETK AILGWLESEQ PELAQEMQRV LPLARFSAIL QRLAAECVPL RSVRLIAETL IEHAQHERDV TVLTDYVRIA LKSQIYHQYS SAEGLLVWLL TPESEGILRD GLRQTQTETF FALNHETSQL LLQQLHMAFP MRAPEQAVLL VPQDLRSPLR TLLQEEFHHV PVLSFAEISS AARIKVMGRF DLEESVALDN DYAA
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