Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plut_1732 |
Symbol | rpsA |
ID | 3745200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium luteolum DSM 273 |
Kingdom | Bacteria |
Replicon accession | NC_007512 |
Strand | - |
Start bp | 1939607 |
End bp | 1941376 |
Gene Length | 1770 bp |
Protein Length | 589 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637769766 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_375629 |
Protein GI | 78187586 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000125222 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00441133 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTTAGAAA CAGTAGCAGT CGAAAAAACG GTCAAGGAAA AACCCGCGAG AAAGAAAATC AAGTATTTTG CTCACTACGA GCCCGCAGAG CTTTCCCAGA TGGAGCAGCT GTACACCAGC ACGCTCAATG AAATCACCGA AGACGAGATC GTAAAGGGAC GCATCGTCTC GATCTCCAAC AAGGACGTCA CCATCGACGT CGGATTCAAG TCGGAAGGCA TCGTCTCCCT GCTCGAGTTC CGCGATGACG ACGAGATCAA GGTCGGCGAT GATGTCGAGG TCTACCTCGA GAACATCGAG GACAAGATGG GCCAGCTCAT CCTCTCCAAG AAGAAAGCCG ACGTCCTTCG TATCTGGGAC AAGATCTATG ATTCAATCGA GAACGACACG ATCATCAACG GCAAGATCAT CAACCGCGTC AAAGGCGGCA TGACGGTTTC GCTTTCCGGC GTGGAGGCCT TCCTTCCCGG CTCGCAGATC GATGTCAAGC CTGTCCGCGA TTTCGACGCT CTTGTCGGCC AGACCATGGA CTTCAGGGTC GTCAAGATCA ACCCCGTCAC CCAGAATATC GTCGTCAGCC ACAAGGTCAT CCTTGAGGAG GAGTACGCTG CACGCCGCGA GGAAATGCTT GCCAACATCA AGGTCGGCAT GGTGCTCGAG GGCACGGTCA AGAACATCAC CGATTTCGGT ATCTTCGTCG ACCTCGGCGG TCTCGACGGT CTCGTCCATA TCACCGACAT CACCTGGGGC CGCATCAACC ATCCGTCCGA GGTTGTTGAG CTCGATCAGC CGATCAAGGT CGTTGTCGTC GGTTTCGACG AGAACACCAA GCGTGTCTCC CTCGGCATGA AGCAGCTTGA GGCGCATCCC TGGGAAAACA TCGAACTCAA ATACCCTGTG GGCTCCAAAG CTCAGGGCCG CGTTGTCTCC ATCACCGATT ACGGCGCTTT CGTCGAGATC GAGAAGGGCA TCGAAGGCCT CGTCCATATC TCCGAAATGA GCTGGACGCA GCATATCAAG CATCCGGGTC AGTTCGTCAC CCTCGGTCAG GAAGTCGAGT GCGTGATTCT GAACATCGAC AAGGATCACA CCAAGCTCTC GCTCTCCATG AAGCGGGTCA ACGAGGACCC CTGGATCGCT CTCAGCGAGA AGTACACTGA AGGGTCGCTT CACAATGGCA CCGTCAGCAA CATCACCGAC TTCGGCGTCT TCGTCGAGCT CGAGGCAGGT GTCGACGGTC TGGTGCACAT TTCCGACCTG TCATGGACAA AGAAGATCCG CCACCCGAGC GAACTGGTGA AGAAGAACCA GGAGCTCAAT GTCAAGGTGC TGAAGTTCGA CGTGCACGCA CGCCGCATCG CCCTCGGCCA CAAGCAGATC AACCCCGATC CGTGGGGCGG CTTCGAGCAG CAGTACGCTG TCGGCGCTGA AACCCCGGGC CAGGTCTCCC AGATCATCGA GAAGGGCGTC ATTGTGATCC TTCCCGGCGA TGTCGATGGC TTCGTTCCGG TGACCCATCT GCTCCAGGGC GGCGTGAAGG ATATCCACAC CTCCTTCAAG GCAGGCGATG AGCTTCCGCT CCGCGTCATT GAGTTCGACA AGGAGAACAA GCGCATCATC CTCTCCGCGC TTGAGTACTT CAAGGACAAG AGCAAGGAGG AGATCGAGTC GTACCTCCAG GCTCATCCGA ACGAGAAGAA GGAGATCGAG GACGCCACCG CCGAGCTGGA ACCCCAGCCG AAGGCGGACA GGAAAGGCGA CAGGCAGTAA
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Protein sequence | MLETVAVEKT VKEKPARKKI KYFAHYEPAE LSQMEQLYTS TLNEITEDEI VKGRIVSISN KDVTIDVGFK SEGIVSLLEF RDDDEIKVGD DVEVYLENIE DKMGQLILSK KKADVLRIWD KIYDSIENDT IINGKIINRV KGGMTVSLSG VEAFLPGSQI DVKPVRDFDA LVGQTMDFRV VKINPVTQNI VVSHKVILEE EYAARREEML ANIKVGMVLE GTVKNITDFG IFVDLGGLDG LVHITDITWG RINHPSEVVE LDQPIKVVVV GFDENTKRVS LGMKQLEAHP WENIELKYPV GSKAQGRVVS ITDYGAFVEI EKGIEGLVHI SEMSWTQHIK HPGQFVTLGQ EVECVILNID KDHTKLSLSM KRVNEDPWIA LSEKYTEGSL HNGTVSNITD FGVFVELEAG VDGLVHISDL SWTKKIRHPS ELVKKNQELN VKVLKFDVHA RRIALGHKQI NPDPWGGFEQ QYAVGAETPG QVSQIIEKGV IVILPGDVDG FVPVTHLLQG GVKDIHTSFK AGDELPLRVI EFDKENKRII LSALEYFKDK SKEEIESYLQ AHPNEKKEIE DATAELEPQP KADRKGDRQ
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