Gene Plut_0180 details

Gene Information

• Locus tag: Plut_0180
• Symbol: rplC
• ID: 3746289
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium luteolum DSM 273
• Kingdom: Bacteria
• Replicon accession: NC_007512
• Strand: +
• Start bp: 187978
• End bp: 188607
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 637768219
• Product: 50S ribosomal protein L3
• Protein accession: YP_374113
• Protein GI: 78186070
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00021825
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.996112
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGGTGCGA TTCTTGGAAA GAAAATCGGC ATGACCCGTT TATATAATGA TAAACGCGAA 
GCTGTGCCCT GCACAATCAT CCAGGCAGGA CCGTGCTTCG TGACGCAGGT CAAGAACGCG 
GAGAAGGATG GCTACGATGC GGTTCAGATT GGTATCGGAG AGAGGAAAGA GCATAAAGTG 
ACCAAGCCGA TGCTCGGCCA TTACAAGAAG GCGGGGGTTA CCCCCGGCTA CATGATGGCA 
GAGTTTGATG CATCCATGTT CGATGTCGAG CTCGCTGCAG GAAGCCCCGT CAGTGTCGAG 
TCCTTCAAGG AAGGCGAGAT CGTCAACGTT CTCGGCGTTT CGAAGGGCAA GGGATTCGCC 
GGTGTCGTGA AGCGCCACAA CTTTGGCGGC GGCTCACGGA CCCACGGCCA GTCCGATAGG 
CTCCGCGCAC CGGGTTCGGT CGGCGGATCA AGCGATCCAT CCCGCACCTT CAAGGGTACC 
AGGATGGGCG GCCGCATGGG CAGCGACAAC GTCACCGTCA GGAACCTCCA GGTCGTGAAG 
ATCATGGCTG AGTCGAACCT GATCATGGTG AAGGGTTCTG TCCCCGGACC GAAAAACTCC 
TATGTCAAGA TTGTATCTAT AAAAAAGTAA 

 

Protein sequence

MGAILGKKIG MTRLYNDKRE AVPCTIIQAG PCFVTQVKNA EKDGYDAVQI GIGERKEHKV 
TKPMLGHYKK AGVTPGYMMA EFDASMFDVE LAAGSPVSVE SFKEGEIVNV LGVSKGKGFA 
GVVKRHNFGG GSRTHGQSDR LRAPGSVGGS SDPSRTFKGT RMGGRMGSDN VTVRNLQVVK 
IMAESNLIMV KGSVPGPKNS YVKIVSIKK