Gene Plut_0007 details

Gene Information

• Locus tag: Plut_0007
• Symbol: secD
• ID: 3745713
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium luteolum DSM 273
• Kingdom: Bacteria
• Replicon accession: NC_007512
• Strand: +
• Start bp: 8986
• End bp: 10773
• Gene Length: 1788 bp
• Protein Length: 595 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637768035
• Product: preprotein translocase subunit SecD
• Protein accession: YP_373942
• Protein GI: 78185899
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.211478
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCATCAA TGAAAAACAA ACGATTCAAT CTGCTTCTGA TCGCTGTAGT TACGCTGGTC 
GCCCTCTGGT CTCTCTGGCC GACCTGGCGG GACTATTCAT TTTCACGCCA GCTATCCTCG 
CTTTCCTCAC AGCAGGACAG CCTGAACTAC ACACTCAGCC ACCGGAACGA AATTGAGGAC 
GCCCGGCAGA AAAGCCTGAA ACTCGGACTC GACCTGAAAG GGGGCATGCA TCTCGTCATG 
GAAGTCGACC AGGTTGACCT GTTCAGCGAG AAGGCATGGA ACCGTGATGC CCGGTTTGAC 
TCTCTCATGG CAGCGGTCGC TCAAGAGGCC CGGACCAGTG ATGCTGATGT GGTCGACCTG 
CTCACGGCTG CATTCAAAAA AGACAATATC AGGTTGAGCC GCTACTTTTA CGATATCCGC 
AACACTGATA GCGAAATACA GGGCAAGCTC CGGAATGAGG CTGGCGATGC ACTGGTGCGG 
GCCCGCGAAA TCATCAGAAA CCGCATCGAC CAGTATGGCG TGGCTGAGCC GATGATCACC 
ACGCAGGGAA ACCGTAAGAT CATCATCGAA CTTCCGGGCG TCTCCGATGA GAACCGGATG 
CGCAACCTCC TGAAAGGAAC CGCCAAACTT GAGTTCAGGC TCCTGCGCGA ACCCGATGCC 
CTCATCAGGA CTCTGGACCG GATCAACAGC GCCATGGCTG CGGGTACCAT AGCTGCCGCT 
TCAACAGGAA AGCAGTCGAT TTCACCTCTC TATGATCTTG TCAGTGTTTC TCCTGGTGGA 
AGCGCTGTCA TCGATGCCCG CAACCGCGAC CTTGTTTCCG CACTGCTTCG CGATGCTGCA 
GTCCGCGATC TTCTGCCTCC CGACAGCGAG ATGCTGATTT CGGCCAGGCC CGAAACGGGC 
AACGACGCCC TCAGCTACCA CGATCTTTAT CTCGTCAAGA AGACCCCTGA ACTTACCGGC 
GGAGTCATCA CCGAAGCCAA AGCAACTTTC GGATCGCAGG GTGTGCAGCC AGAGGTGCTC 
ATGTCGATGA ATTCCGAGGG GACCTCGAAA TGGGCACGCA TTACCGGTGC AAATATTGGT 
AAACGCGTTG CCATCGTGCT TGACGGAGCA GTTTACAGCG CACCTGTCGT GCAGTCGAAA 
ATCCCGAACG GCAACTCCGT CATCAATGGC ATTCAGAGCC TCGAAGAGGC AAAGGACCTT 
GAAATCGTCC TGAAAGCAGG AGCACTTCCC GCTCCAGTGC GGATTATCGA GGAACGTACC 
GTCGGCCCCT CTCTCGGCGC TGATTACATC CGCGCAGGGT TCCAGTCGAT GATCTGGGGT 
TTTTCGGCGG TTGTCATCTT CATGATCATC TACTACCGGA CAGCTGGACT TGCAGCAGAT 
ACCGCACTTG TCCTGAACGT TCTTATCGTT CTCTCGGTCC TTGCCGGATT CAATGCCTCG 
CTTTCCCTAC CGGGTATCGC CGGCATCGTG CTTACAATGG GTATGGCTGT GGACGCCAAC 
GTACTGATCT ATGAGCGCAT CCGCGAGGAG ATCGCTGATG GCCGAACGGT TACGGCCGCC 
GTTACGCAGG GCTATGACAG GGCATTTTCC TCCATCCTGG ATTCCCATGT CACCACGCTC 
GCCGCAGCTT TCCTGCTCTA TACTTACGGC ATCGGTCCGA TTCAGGGTTT CGCCGTCACC 
TTGATGATCG GTACGGCGGC AAGTCTTTTC ACCTCCATCG TCGTCACCCG CGAGATATTC 
CAGTTCCTGC TTTCACGGAA CAAGATGACA GCTAAAAGCT TCGGTTAA 

 

Protein sequence

MSSMKNKRFN LLLIAVVTLV ALWSLWPTWR DYSFSRQLSS LSSQQDSLNY TLSHRNEIED 
ARQKSLKLGL DLKGGMHLVM EVDQVDLFSE KAWNRDARFD SLMAAVAQEA RTSDADVVDL 
LTAAFKKDNI RLSRYFYDIR NTDSEIQGKL RNEAGDALVR AREIIRNRID QYGVAEPMIT 
TQGNRKIIIE LPGVSDENRM RNLLKGTAKL EFRLLREPDA LIRTLDRINS AMAAGTIAAA 
STGKQSISPL YDLVSVSPGG SAVIDARNRD LVSALLRDAA VRDLLPPDSE MLISARPETG 
NDALSYHDLY LVKKTPELTG GVITEAKATF GSQGVQPEVL MSMNSEGTSK WARITGANIG 
KRVAIVLDGA VYSAPVVQSK IPNGNSVING IQSLEEAKDL EIVLKAGALP APVRIIEERT 
VGPSLGADYI RAGFQSMIWG FSAVVIFMII YYRTAGLAAD TALVLNVLIV LSVLAGFNAS 
LSLPGIAGIV LTMGMAVDAN VLIYERIREE IADGRTVTAA VTQGYDRAFS SILDSHVTTL 
AAAFLLYTYG IGPIQGFAVT LMIGTAASLF TSIVVTREIF QFLLSRNKMT AKSFG