Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plim_4054 |
Symbol | |
ID | 9140774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Planctomyces limnophilus DSM 3776 |
Kingdom | Bacteria |
Replicon accession | NC_014148 |
Strand | - |
Start bp | 5205947 |
End bp | 5208076 |
Gene Length | 2130 bp |
Protein Length | 709 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | |
Product | protein of unknown function DUF87 |
Protein accession | YP_003632064 |
Protein GI | 296124286 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0459328 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCAACTT CACCAGTCGA ACATCTCTCT GGCCTCGTAG TCGGTGTCGT AGAGTCAGTT GCTCCTGATC AAGTGCGGGT GATGCTTGAA CTCGACACTC CGCACACGAC GGCATTGAAC ACTGGGTCGC CTGTCGCGTT TCCGCGCCTG AACGGTTATG TGCTGATTCC CCATGAAGCG GGGGCGACGG TTGCTTACAT TTCCTGGATA GGAATTGAGC GTTCACCATT CCCGAAACGA TCTGGCCTCA AGGACTTTGG CTTGATCGAC CTTCCATTTC CGTTGCGAAA AATGGCAGTT TCACCAGTCG CAACGCTGAC ATGCAAACGC GACAAGACCT CGCGCACCCA GTATGTGCTC TCCCGTGGCG TTGTCGCCTT TCCCTCTGTC GGGGATCAGG TGTTGATTCC CACTGCCGAA CAAATTGAAG CAATCGTTGG GGCGAAGGAT ACGGATAGGC GCGTCAAGAT CGGCGTGTCG CCCCTCGGGG CAAGTACGAA AATCATGGTC GACCCAGACA AGCTGTTCGG GCGGCACCTC GCGGTGCTGG GGAATACCGG TAGCGGGAAG TCATGCACGG TTGCCGGATT GATTCGCTGG TCGATGGATG CAGCCAAAAA GCAGATGTCC GAAACCGGCA AGACGGGACG TCCCAATGCC CGCTTTATCG TTCTCGATCC TAACGCTGAA TACTCGAATG CTTTTCGGGA CGACCCTCAA AATGTCCGTC TTTTTAAAGT TCCGCCAGTC TCCGGAGATG ATCGTGCTTT GCAGGTGCCA GCCTGGATGT GGTGCGGACA TGAATGGACG GCCATTTCCA ACGCTCAACC CGGTGCCCAA CGGCCTTTGT TGATGCAAGG GTTAAGAGAT TTGAAGAGTG GCTCTGTTTC GCGGGGATCG CGTGAAGCAA TATTACGACG CTATGTGATC TCTTACATGG TGCGAGTTTC GGAGATGTTG AGCCGTGGGA CCATAGCGTT TGCTGGTTCT CCTCGACCTC GTTTTGAATG CGCTGGTTTG CTGAATGGGA TAGCGAAGGA CTGTCAAGCA TGGTCGGGTG ATCTTGAAGG TCAAGCACAA ACGTTAATGC AGAACGCTGC TTCGGCTGCA TTACAAATCG AGCAATCTAG GAAATCGGGC CAATACTACA ACGACTTCCT CGTATCAGAC TTGGAGAGTA TTCGATCTTC GCTAGAGGAT TGTGCAAAAG TATTGCCCGA TGTTGCTCCG GAAGGGCCTA TCAGCGAAGA CTCGCCAAGC TACTTCGACG TGAATATTCT CGCTGACCAT CTTGAACGTA TAGCCGTTGA GCAAGGTGCC GGTGTGGCGG GCTTCGTTGC GACTCTCGGT TTGCGTATTC GAGCAATGTT GGCGGATCAG CATCTCGGGG CTGTCGTCAA TGGAAATCCT ACGTTTGAGG CGTGGCTTGA AGAGTATGTG GGGGCAGATA ATGCGTCGAA TGGAAATGTG GCGATCATTG ATCTTTCTCT CATCCCAAGT GAAGTTGTCC ATATCGTAGT CGCCGTGTTG GGCCGACTTG TGTTTGAGTC ACTTCAGCGT TATCGGCGCG ATAATGCCGC CGGTGAGTCA CTTCCGACCG TCCTAGTACT TGAAGAGGCG CATACATTCG TGCGTAAAGG GCATGAAGAA TCCTCCGGCA CGGCAACAGC TACTGCACTA TGTCGGGAGA CATTTGAGAA AATTGCCCGC GAAGGACGCA AGTTCGGACT CGGACTCGTT GTGTCGTCAC AAAGGCCCTC AGAATTGTCA GCTACCGTCC TGGCGCAGTG CAACACATTC ATTTTGCATC GCATCGTAAA TGATGCTGAC CAGCACCTCG TTGGCAAGCT TGTGCCTGAC AATGTCGCAG GATTGTTGGC CGAGCTTCCA AGTCTGCCCT CGCGTCAAGC GATTTTGCTT GGCTGGGCAA CACCAATTCC GATTCTTGTA GAAATTGACG AGTTGCGCGC GGATCAGCGG CCACATTCAT CTGACCCTGA TTTCTGGGAT GTATGGACGC ACGAAAAGCC TCGCGATTTG GATTGGAAAG AAGTGGTTGG GGACTGGGTA GGACAGGTCA AAGTCGATGA AACTGAAGAT GGAGAGTTGC TAGAAAATGT AGGCGAGTGA
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Protein sequence | MATSPVEHLS GLVVGVVESV APDQVRVMLE LDTPHTTALN TGSPVAFPRL NGYVLIPHEA GATVAYISWI GIERSPFPKR SGLKDFGLID LPFPLRKMAV SPVATLTCKR DKTSRTQYVL SRGVVAFPSV GDQVLIPTAE QIEAIVGAKD TDRRVKIGVS PLGASTKIMV DPDKLFGRHL AVLGNTGSGK SCTVAGLIRW SMDAAKKQMS ETGKTGRPNA RFIVLDPNAE YSNAFRDDPQ NVRLFKVPPV SGDDRALQVP AWMWCGHEWT AISNAQPGAQ RPLLMQGLRD LKSGSVSRGS REAILRRYVI SYMVRVSEML SRGTIAFAGS PRPRFECAGL LNGIAKDCQA WSGDLEGQAQ TLMQNAASAA LQIEQSRKSG QYYNDFLVSD LESIRSSLED CAKVLPDVAP EGPISEDSPS YFDVNILADH LERIAVEQGA GVAGFVATLG LRIRAMLADQ HLGAVVNGNP TFEAWLEEYV GADNASNGNV AIIDLSLIPS EVVHIVVAVL GRLVFESLQR YRRDNAAGES LPTVLVLEEA HTFVRKGHEE SSGTATATAL CRETFEKIAR EGRKFGLGLV VSSQRPSELS ATVLAQCNTF ILHRIVNDAD QHLVGKLVPD NVAGLLAELP SLPSRQAILL GWATPIPILV EIDELRADQR PHSSDPDFWD VWTHEKPRDL DWKEVVGDWV GQVKVDETED GELLENVGE
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