| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3386 |
|---|
| Symbol | |
|---|
| ID | 9140102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 4379628 |
|---|
| End bp | 4381076 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_003631398 |
|---|
| Protein GI | 296123620 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.944667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGCACA CCACACAGGA GCCAGAAACA ACACCTTCAC GAACGCATCT TTCACTGGCG
GATGGTGTCA ATCTCATCGT GGCGATTGTG ATTGGCAGTG CGATTTACTT CACCTCGCCC
ACAGTTCTCT TTTTGAGTGG CAGCCCTCTC ATGATGATGG GCCTGTGGGT TGCCGGCGCA
CTCATCTCAC TGATGGGCGC TTTCTGTTAT GCCGAGCTGG CCACCACTTA TCCGCGAACA
GGGGGCGAAT ACTGGTATCT CACACGCGCC TATGGGCCTG TCGCAGGTTT TCTGTTTGGC
TGGTTGCAGC TCACCGTCGT GCAGACGGGC AGCATTGGGG CTCTGGCGTG GATTTTCTCC
GAGTTCGCCA ATCGAATGTT CTTAACGGAT CTCGCTACCA CCCCGGCTGC TTCTCAAGTC
GCCTGGGGTG CCATGCTGGC AGTCGCCCTC TTGACGGTGA TCAACCTCAT CGGGATTCAG
GCCGGTGCTC TGGTGCAATG GATTCTGGTC TCGCTCAAAA TCCTTGGGCT GAGTGCCTTG
ATTGTCGCAG GTCTTTGTTT CGGCAGTGCC GATCCGGGAT TCAGCCAGCC GGTCGTCATC
AGTGAGATTC CCAATCTGGG AGTCGCCCTG CTGCTGGTGA TGTACGCCTA TGGTGGCTGG
AACGATGCGG GCTTTGTGGC AGCCGAAATT CATCACCCGG GGAAGAACAT TCCTCGCGCG
TTGTGGATTG GGCTGGGGCT GGTAGCAATC CTCTACCTGT TAATCAATCT GGCTTATTTA
CGAGGGCTGG GGGCCGCTGG TTTGGCCGCA TCCAAAACAC CACCCAGTGA TCTCTTTCGA
CTGATGCTGG GGGATTACGC CGCCCGGGCC ATGCATGTCG TTGTGGCGAT CTCCGCCTTC
AGTGGATTGA ACAGCTTGAT TCTGGCCGTC GCACGTGTCC ATCAGGCGGT TGGTCAGGAA
CATCGGCTAC TCGCGCCGCT GGGTTGGCTT TCACGACACC GGCAATCGCC CTATATCTCG
TTGATTGTGC AGGGGATCGT CAGCAGTGGG CTGATTCTGC TCTTCGGCAC GAAAACCGGT
CAGGAAGCAC TCAATCAACT CCTTGAAATG GCTTATCTTC CCACGATCAC CTGGAGCAAC
TTTGACAGTG GTTTTTCGAC GCTATTCGCC ATGTCGGCCC CACTTTTCTG GCTGTTTCTG
GGCCTGACGG GTCTGAGTGT CCTGATCCTC CGGCAAGTCG ATCCGCACCG CGAACGTCCC
TTCAAAGTGC CTGGCTACCC GATTGTGCCG ATCCTCTTCG TCGCGGTCTG CATGGCCATG
CATCATCTGG CTGTCAGTTA TGCCGATCGA CTGCTGCTGA TTGTCCTTCC TGCCGTTGCA
TTGGGACTGA TTCTCTCCAT TTTCAGTGGC TATCACTCCA CAGAAGAAAC CACAAATATT
CCCTCATGA
|
|---|
| Protein sequence | MTHTTQEPET TPSRTHLSLA DGVNLIVAIV IGSAIYFTSP TVLFLSGSPL MMMGLWVAGA
LISLMGAFCY AELATTYPRT GGEYWYLTRA YGPVAGFLFG WLQLTVVQTG SIGALAWIFS
EFANRMFLTD LATTPAASQV AWGAMLAVAL LTVINLIGIQ AGALVQWILV SLKILGLSAL
IVAGLCFGSA DPGFSQPVVI SEIPNLGVAL LLVMYAYGGW NDAGFVAAEI HHPGKNIPRA
LWIGLGLVAI LYLLINLAYL RGLGAAGLAA SKTPPSDLFR LMLGDYAARA MHVVVAISAF
SGLNSLILAV ARVHQAVGQE HRLLAPLGWL SRHRQSPYIS LIVQGIVSSG LILLFGTKTG
QEALNQLLEM AYLPTITWSN FDSGFSTLFA MSAPLFWLFL GLTGLSVLIL RQVDPHRERP
FKVPGYPIVP ILFVAVCMAM HHLAVSYADR LLLIVLPAVA LGLILSIFSG YHSTEETTNI
PS
|
|---|
| |