Gene Plim_3007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_3007 
Symbol 
ID9139719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand- 
Start bp3890679 
End bp3891353 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content58% 
IMG OID 
ProductRNA polymerase sigma factor, sigma-70 family 
Protein accessionYP_003631028 
Protein GI296123250 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.824244 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCCAA CCATGCCGCG GATTGACGTT CCGCAAGACA CGAGTGACGA CTTCGATTCC 
AGCGGCTGTG AAGCTCGACT GGTGGAGTCT GCACGCAGTG GCAACGAGGA CGCTTTCGCC 
GAACTGGTGC ATCGCTACCA GCGGCGGGTA CAGCGGGTCA TTGGCCGCTT TGTTTCGGAC 
GACGAAACTG TCGCCGATCT GACGCAGGAA ACCTTCCTGC GCGCCTTTGT GCGGCTCTCT 
CAGTTTGACC CCTCGCGGCG GTTTGGGCCA TGGCTCTTCC AGATTGGAGT GAACCTGACG 
CTCGACCATT TGCGGCAGAA AAAACGCCGC ATCTGGTGGT CGCTCTTCAG CCAGACTGGT 
CAGGAGAAAT CTCCTGACCC GGAGATGGCC GATCCTCGGG TGAAGCTCGA TTTGCAGCAG 
GAAGTGCAGA CTGTGCTGGA GCAGATTCCA GAAAAGTACC GCACGGTTCT GGTTCTGCGA 
GATCTGGAAA ACTTTTCGAC ATCCGAAATT GCCGCTGTCC TCGGAAGAAC CGAAGCGACG 
ATTCGCTGGA GGCTGTCTGA GGCCCGGCAG CGATTCAGTA TCTTGTGGGC CAAACGCAGC 
ACTTTGGCAG GTACAACTTT GCCCGGCTTT GCCGATGATG GTACGGCGGC TTCCTCGGAA 
GCAGAAGTGG AGTGA
 
Protein sequence
MSPTMPRIDV PQDTSDDFDS SGCEARLVES ARSGNEDAFA ELVHRYQRRV QRVIGRFVSD 
DETVADLTQE TFLRAFVRLS QFDPSRRFGP WLFQIGVNLT LDHLRQKKRR IWWSLFSQTG 
QEKSPDPEMA DPRVKLDLQQ EVQTVLEQIP EKYRTVLVLR DLENFSTSEI AAVLGRTEAT 
IRWRLSEARQ RFSILWAKRS TLAGTTLPGF ADDGTAASSE AEVE