| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_2580 |
|---|
| Symbol | |
|---|
| ID | 9139291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 3350325 |
|---|
| End bp | 3351998 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | Kelch repeat-containing protein |
|---|
| Protein accession | YP_003630604 |
|---|
| Protein GI | 296122826 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGACTC GTAGTTACCT CTTCGCTGGC CTTCGCAGTG GGGGAATCGT AATCGCCACC
TTAGCAATGA ACCTCGCGGT TCCGCTGATT GCTCAAGCCC ATTTTCTGTG GGTTGTGGAT
GCCAACCAGT CAGCCGATGG CAAGGTGCAT GTTTACTTCT CCGAAGAAGC TGCCCCTGAT
AATCCGGCAC TCCTGGAAAA AATCCTCGGG GCCAAGCTCT GGGAAGCGAA CCTCCACGAT
GATGCCGTCA AGGTGAGTCC CCTCAAGTTT GAAAAAGGGG AAAATTCTCT GGAAGCCACC
TTCTCACCCA AATCGACCAA CGCCGGAGTC TTTCTCGATT ACGGCGTCAT GTCGAAAGGT
GGAGCCGAAC CCTACCTCTT GAGATACTGC GGTCGCTCAC AAACGATTGC CAACCGCAAA
GGTGGCAAGG TCATTGGCGA TGCGGCGGTA TTGCCATTGG AAGTTGTCGC CGAACGCTCA
GGCGACGGCT TCCTGCTGCG TACCTTCTGG CAAGGCCAGC CAGCCGAAGG GATTGAAGTG
ACTGTCGATG GTGGCGATCT TTCGGCCAGC AAAGAAGGTG TTTCCAATGC TCAGGGAGAA
CTCGCCCTGG GAACACTGGC CAACGGACTC TATTCCATTC GCGTCAAAAA AGTGCTGGAA
GAACCAGGCA AGCTGGGGGA TAAAGAATAC AAGTCCATTC GGATCTACAG CACAACTTCA
CTCTTGATCA AGCCGCCCGC TGAAGTGACT CAACCCGCCG TATCAAAGGC CTTACCTGAA
CTTCCTCGCG GCATCACCAG CTTTGGTGGA GCTGTCGTGG GCGATGTGGT CTATGTCTAC
GGAGGCCATG CAGGGGGTGC CCATCATTAC GCGAAAGAAG ATCAATCGCG TGAACTGCTG
GCGCTGAACG TCAAGCAGCC TTCCGAATGG AAAGTGGTCG GAGAAGGACC AGAGCGAACT
GGTCTGGCGA TGGTCGCCGT GGGAAATGAC CTTTACCGCA TGGGCGGTTT TATTGCTGAT
AACGGCAAGG AAGAGAAGGA AGTTCTCAAA AGCACCAGCG ATTTTGCCCG CTGGGATGCG
GCCATTAAGC AGTGGATCGA ATTGCCGGCA CTTCCTGAGC CACGCTCTTC GCTGGATGCT
GCTGTGATCG GTAAAACGAT CTATGTCGTC GGTGGCTGGA ATCTCAATGG GGGTGGCAAG
GAAGCACAGT GGCACGAAAC AGCCTGGAAG TGTGACGTTT CGGCAAATCC TCCTGTCTGG
CAGCCGATTG CAAATCCACC GTTCTTGCGC AGAGCACTTT CCCTCGCCGA GCATCAGGGG
AAGCTTTATG TGATCGGTGG GATGAAAAAT CAGGGTGGCC CGACGACAGA AGTTGCCATC
TACGATCCTG CGACAAATTC ATGGAGTTCA GGACCTGCTC TACCTGGCGA AGGAATGGAA
GGCTTTGGCA ACTCTTCATT CGCCATCAAT CAGCATCTCT TCGTGAGTGT GATGTCGGGC
AAAGTCTATA AGCTCTCCGC CGATGGTTCC CAGTGGGATC AGGTCTACCA GTTGGAGAAA
CCCCGTTTCT TCCATCGCAT GCTCCCCATC AACCAGCATC AACTGGTGTT TGTGGGTGGA
GCCAGCATGG AAGCCGGCAA AGCGAAAACC ACGGAAGTCT TTGACATCAA GTAG
|
|---|
| Protein sequence | MLTRSYLFAG LRSGGIVIAT LAMNLAVPLI AQAHFLWVVD ANQSADGKVH VYFSEEAAPD
NPALLEKILG AKLWEANLHD DAVKVSPLKF EKGENSLEAT FSPKSTNAGV FLDYGVMSKG
GAEPYLLRYC GRSQTIANRK GGKVIGDAAV LPLEVVAERS GDGFLLRTFW QGQPAEGIEV
TVDGGDLSAS KEGVSNAQGE LALGTLANGL YSIRVKKVLE EPGKLGDKEY KSIRIYSTTS
LLIKPPAEVT QPAVSKALPE LPRGITSFGG AVVGDVVYVY GGHAGGAHHY AKEDQSRELL
ALNVKQPSEW KVVGEGPERT GLAMVAVGND LYRMGGFIAD NGKEEKEVLK STSDFARWDA
AIKQWIELPA LPEPRSSLDA AVIGKTIYVV GGWNLNGGGK EAQWHETAWK CDVSANPPVW
QPIANPPFLR RALSLAEHQG KLYVIGGMKN QGGPTTEVAI YDPATNSWSS GPALPGEGME
GFGNSSFAIN QHLFVSVMSG KVYKLSADGS QWDQVYQLEK PRFFHRMLPI NQHQLVFVGG
ASMEAGKAKT TEVFDIK
|
|---|
| |