| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1575 |
|---|
| Symbol | |
|---|
| ID | 9138275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 2028101 |
|---|
| End bp | 2029786 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | metal-dependent phosphohydrolase HD sub domain protein |
|---|
| Protein accession | YP_003629607 |
|---|
| Protein GI | 296121829 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.874521 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACGA TCTCTATCGA ACACTCAAAT CCACTGGCAA CACAGAAAGA TCTTGCCTGG
GGTATCGAGT CGATCAACCG CACCTCGCCG GAAAGCGATC AAGCCGTTAC CTCTCTACTT
GAGGAAATGG CAGCGGCCAC TGGTTTGCCG TCATTCGTCT GGATACCCTG CCGCCGCTAC
TGGAAAAGTG AGACATCAAT CCCTTCCTGG TTAACTCTCT CGCCAGCATT GGTTGACCGT
TTTCTGTATG CCAACGGTTC GACGCTGGTT GATCTGGGGC CATCCATCCG GTTCATTGGA
TTTCCAGTGA CTCTACCGAC AGGAGAGGTG GCCATACTCG GCTCCGTCGC GCGGGAAGGT
GCAGCCAATG CTCCAGCAGA ATGGATAATG GCTGCGACAG ATGCTGGTTG GTCACAAGCC
GAGCTGACTC AATTTGTCGA TTCATTGCTT TGCATCCCAC GCCCTACACT GGAGCGTCTC
TGTGCTCTGG CAGGTCGCCA TTTTTCTTCG ATGCGGACCG TTGATCGTCT CGACGATGAA
TTGCAGCAAC TCACTTCACA GATTGAGTAC ACATTCGAAG AAATCAGCCT GCTGCATAGC
CTGACACAAC GCTTACAACT CTCTCGCTCA CCTTTAGAAC TGGCAAATCA TTGCCTGGCA
CGCCTGCATT CTTTGATTCC CGCGGCAGGG AACGCCATCT GGATGCAGGT CGATCACGAC
AGACATCATT TCTCGGTTGA GGGACACCTA CCACTCGATG AGTTCCAGCT CGCCAGGCTG
ACATCCCGTT TTGAAGAGCA TGACTGGTCG CGGCCACTGG TCAAAAACAA TCTCGCAAAA
ACTTTGCTGG GTGCCGACTT TCCAGGTCTG CAAAACTTCA TTCTTGTCCC GATTGGAGAA
GCTCCTTTCC GCCGAGGCTG GATCGTCAGT TGCAACCTTT CTGACGACAA AGAATACGGC
TCTGTCGAAG CGAGTCTGCT GGGTTCGATT GGTACCATTC TCGGGACGCA CCTCCGCAAT
ATTGAACTTT ATCGCGAGCA TCAGTCTCTG GTGATCAGCT TTGTCCGTTC TCTGGTGCAA
ACTCTCGACG CTAAAGACCC TTACACTCGT GGCCACAGTG AGCGTGTCGC ACTGATTGCC
AGACGGCTCG GTCAGGAACT CAGGCTGCCC GCTGATGATC TCGAAGACAT TTACATGTCC
AGCATGCTGC ATGACATCGG CAAGATTGGT GTCGATGACC GGATCCTCCG TAAACCCGAT
CAGTTGACCC CGGAAGAGTT CCGGGCAATT CAACAGCACC CGATGATTGG CTATCGCATT
CTCAAACAAC TCAAGAATCT GCAGCATATA CTTCCAGGAG TGCGCAGCCA TCATGAAGCC
TTCAATGGCA AAGGCTATCC GGACTGTCTT AAGGGAGAAG AAATTCCTTT GATGGCCCGC
ATTATTGCTG TTGCCGACAG CTACGATGCG ATGTGCAGTG ACCGCCCTTA TCGCAAAGGG
ATGCCCTTGG AACGTTTGGA AGAAATCTTC CGCAGAGGCT CAGGTCTCCA GTGGGATCCC
AATGTGATTG ATGCGTACTT TGCCGCCCGG GAAGACATTT CAGAAATTTG TCGAGCCTAC
TCGCCCACAG GTGCAGATCT ACTGGCCGAG TTGCCGATCG AGACGATGGC ACGCCGGTTT
CTTTAA
|
|---|
| Protein sequence | MATISIEHSN PLATQKDLAW GIESINRTSP ESDQAVTSLL EEMAAATGLP SFVWIPCRRY
WKSETSIPSW LTLSPALVDR FLYANGSTLV DLGPSIRFIG FPVTLPTGEV AILGSVAREG
AANAPAEWIM AATDAGWSQA ELTQFVDSLL CIPRPTLERL CALAGRHFSS MRTVDRLDDE
LQQLTSQIEY TFEEISLLHS LTQRLQLSRS PLELANHCLA RLHSLIPAAG NAIWMQVDHD
RHHFSVEGHL PLDEFQLARL TSRFEEHDWS RPLVKNNLAK TLLGADFPGL QNFILVPIGE
APFRRGWIVS CNLSDDKEYG SVEASLLGSI GTILGTHLRN IELYREHQSL VISFVRSLVQ
TLDAKDPYTR GHSERVALIA RRLGQELRLP ADDLEDIYMS SMLHDIGKIG VDDRILRKPD
QLTPEEFRAI QQHPMIGYRI LKQLKNLQHI LPGVRSHHEA FNGKGYPDCL KGEEIPLMAR
IIAVADSYDA MCSDRPYRKG MPLERLEEIF RRGSGLQWDP NVIDAYFAAR EDISEICRAY
SPTGADLLAE LPIETMARRF L
|
|---|
| |