Gene Plav_3481 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3481 
Symbol 
ID5455563 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3725685 
End bp3727799 
Gene Length2115 bp 
Protein Length704 aa 
Translation table11 
GC content65% 
IMG OID640879066 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001414737 
Protein GI154253913 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value0.112139 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCGGA CCTCGATCAG ACACAAGCCG ATGATTGGCA TGGCGGCCTT TCTCCTTGCC 
TGTCTTTTGG CTTGGGCCGC GCCGCTGCCC GCATCGGGCG AAACCGTCCT GCGGCCGCCA
TCCGCCGCCG GCCTCGCCAA TGGCGATCCT CTGATGCTGG AGGAAGGCTG GACCGTCTAT
CGCGACGCCC TTGTGCCTGC GGCGCGCTTC GGCGGCGGCT GCTCCCTCTC CTTCGCAGGT
CTCGAAGCCG AGCACGTGAC ACTTCCCGAT ATCTGGGGCC CCGCGCTCAC CACCCGCGTT
TCCACAGGCC ACGGCACCGC CACCTATTGC CTCGATCTCG CCCTGCCGCA AACCTCGCAG
GCGCTGGCCC TCTCCCTCGG CACCACGCGC TCCGTCTACG CGATCTATGC CGTCTCGAGA
GGACGCTATG GCGAGTTGGA AGTGCAGTCC CTGCACCGCA ATGGCGATCC GTCGCGCGCG
GAAGGCATCG TTGCCGTCAA CCCGACCGCG CCCGTCATCC CGCTGCCCCA CGATCTCCGG
CAGTTCCGCC TCGTCGTGCA GCTCGCCAAT TACGTTCACA AGCAGGGCGG CATCGTCGAC
GTGCCCTCGA TCGGCTTCCT GCAAAAAATG GATTCCGCCG AGCGCCGCGC CAGCGCGCTG
CCGACGGCGC TCGCACTTGT CCTCGTCCTT GTCGCGATCC TCACGCTCGT CGTCGGCCGT
TCCACCAGCA ACCCGCGCGG CCATCTGATC TTCGCCGCCC TCTGCGCCAC CTCGGCGCTT
CGTGTCGTCC TTGTCAGCAA TCTCATCTGG GACTATCTGC CCTCCTTCCC GGAAGCGCGC
AAATACGACC TCGAATATTT CTCGCTCTTC CTTGTCGCCC CCGCTTACTA CGCTTTCATC
TGCTATCTCT TCCGCGAGGG CAGGGTGGTC TGGGTCGACA AGCTGATCTA TGGCGTCTCG
GCCGTCTTCT GCCTTTTCGC CCTTCTTGTC GCGCCCTTCA TGGCGCCGGG CACCGTCACG
CTGCTGCGCG AGCCGTTCCA GCTTCTCTGG GCCGTCATCA TCCTCGCCGT CGGCGTCACG
ATCCTCCGTA CGCTGCTGAT GGAAAAGGAA GCGCGCCGCG ATGCGCTCGC CGTCCTTCTC
GCCGCCATGG TCTATTTCGC CTACGAAGTG CTGACGAGCA TGAAGATCAT CGGCGCCTCG
ATGGAGCTGT CGAACCTTCT CATCGTCTTC GTCACCATGC TCCACATCCG CGCCTTCATG
CTGAAATACC GCCGCGTGGA GGGCGAGCGC GACACCCTCC ACCGGACCCT GCGCGATGCG
AACGCCGTTC TCGAGGCGCG CGCCGACGAG CTCACCCGCG CCCTCATGGC CGCCGAACAG
GCATCCCTCG CCAAATCCGA ATTCCTCGCC ACCATGAGCC ACGAGCTCCG CACGCCCCTG
AACGCCATTA TCGGCTTTTC CGAAACTATG AAGCTCGAAG TCTTCGGCCC TCTCGGCCAC
GGCAAATATG CGGAATATGC GAAGGACATC AACAATTCGG GCACCCATCT TCTCGATCTC
GTCAGCGACA TCCTCGACAT CTCCCGCGTC GAATCCGGCA CCGATGCGCT CAACGAAGAG
GAAGTCTGCA TCGAAAGCGT GGCAAGGGCG GTGCTCGCCG CCACCGCCGC TCAGGCCGGT
AAGGCGGAAG TCGTCTGCCG CCTCGATGCG GATGCCGGCC TCCCGCCGGT CTTCGCCGAC
GAGCGCAAGA TCAGGCAGAT ACTGACGAAC CTCGTCGGCA ACGCGATCAA GTTCAATGTC
CCCGGCGGCA CGGTCGCGGT CACGCTCGCG CGGGACGAGA GCGGCTACCG CATCGCCGTC
GCCGACACCG GCATCGGCAT CGTCGCCGAA GACATCCCCA AGGCGCTCGC CCGCTTCGGT
CAGCTCGAAG ACCAGTTCCG CCGCAAATAC GAAGGCCTCG GCCTCGGCCT GCCCATCGTC
CAGGTGCTGA CCGAACAGCA TGGCGGCCAC TTCGCCATCG AAAGCACCCC CGGCCGCGGC
ACCACGGTCA CCATTACCCT CCCGCGCGAA CGCTGCCTGC CCTCCGCCCC GGACCTCGCC
TGCGCTGCCG GGTAA
 
Protein sequence
MDRTSIRHKP MIGMAAFLLA CLLAWAAPLP ASGETVLRPP SAAGLANGDP LMLEEGWTVY 
RDALVPAARF GGGCSLSFAG LEAEHVTLPD IWGPALTTRV STGHGTATYC LDLALPQTSQ
ALALSLGTTR SVYAIYAVSR GRYGELEVQS LHRNGDPSRA EGIVAVNPTA PVIPLPHDLR
QFRLVVQLAN YVHKQGGIVD VPSIGFLQKM DSAERRASAL PTALALVLVL VAILTLVVGR
STSNPRGHLI FAALCATSAL RVVLVSNLIW DYLPSFPEAR KYDLEYFSLF LVAPAYYAFI
CYLFREGRVV WVDKLIYGVS AVFCLFALLV APFMAPGTVT LLREPFQLLW AVIILAVGVT
ILRTLLMEKE ARRDALAVLL AAMVYFAYEV LTSMKIIGAS MELSNLLIVF VTMLHIRAFM
LKYRRVEGER DTLHRTLRDA NAVLEARADE LTRALMAAEQ ASLAKSEFLA TMSHELRTPL
NAIIGFSETM KLEVFGPLGH GKYAEYAKDI NNSGTHLLDL VSDILDISRV ESGTDALNEE
EVCIESVARA VLAATAAQAG KAEVVCRLDA DAGLPPVFAD ERKIRQILTN LVGNAIKFNV
PGGTVAVTLA RDESGYRIAV ADTGIGIVAE DIPKALARFG QLEDQFRRKY EGLGLGLPIV
QVLTEQHGGH FAIESTPGRG TTVTITLPRE RCLPSAPDLA CAAG