| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3449 |
|---|
| Symbol | |
|---|
| ID | 5456178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3688550 |
|---|
| End bp | 3689296 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640879035 |
|---|
| Product | acetoacetyl-CoA reductase |
|---|
| Protein accession | YP_001414706 |
|---|
| Protein GI | 154253882 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01829] acetoacetyl-CoA reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.0871838 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCTG AACAACGCAC CGCCCTGGTC ACGGGCGGCA ACGGTGGCCT GGGCGCGGCC
ATCGCCCGAG CCTTGCACGA TGCTGGGCAT ACCGTGCTCG TCATCCACTC GCCAGGCAAT
GCCAGCATCG GCGCGTGGTT GGAAGCCCAG GCGGGTGAAG GTTACAACTT CATCGCCTAC
GGCGCGGATG TGGCCGACCA TGCCTCCTGC CAGGAGCTGG CCGGCCTCAT TCAAGCAGAC
GGTCACCACA TCGACATTCT GGTCAACAAC GCGGGCATCA CGCGTGATGC TACGTTCCGC
AAGCTGAGCT ACGCCGATTG GGATGCGGTT CTGCGCGTCA ATCTCGACTC CGTTTTCAAC
GTCACTCGGC CATTCATTGA CGGCATGCTC GAAAGGGGCT GGGGCAGGAT CATCAACATC
TCCTCCATCA ACGGCTCGAA GGGGCAGTTC GGCCAAACCA ACTACTCCGC CGCGAAAGCC
GGGATGCATG GATTCACCAA AGCCCTCGCG CAGGAGGTGG CGCGCAAGGG CGTGACGGTC
AACACCGTCT CGCCGGGGTA TCTGGATACG AAGATGGTGA CGAGCATGTC GGAGGAAGTG
GTCAAGCAGG TGGTTGCCGG TATTCCCGTG GGTCGTCTGG GACGGCCTGA GGAAATCGCC
GCACTGGTTG CATTCATCGC CAGCGAGTCT GCGGGGTTCA TGACCGGCAG CAATGCGTCG
ATGAATGGTG GCCAGCACAT GTACTGA
|
|---|
| Protein sequence | MPAEQRTALV TGGNGGLGAA IARALHDAGH TVLVIHSPGN ASIGAWLEAQ AGEGYNFIAY
GADVADHASC QELAGLIQAD GHHIDILVNN AGITRDATFR KLSYADWDAV LRVNLDSVFN
VTRPFIDGML ERGWGRIINI SSINGSKGQF GQTNYSAAKA GMHGFTKALA QEVARKGVTV
NTVSPGYLDT KMVTSMSEEV VKQVVAGIPV GRLGRPEEIA ALVAFIASES AGFMTGSNAS
MNGGQHMY
|
|---|
| |