Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3446 |
Symbol | |
ID | 5456224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3684151 |
End bp | 3686919 |
Gene Length | 2769 bp |
Protein Length | 922 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640879032 |
Product | ABC transporter related |
Protein accession | YP_001414703 |
Protein GI | 154253879 |
COG category | [V] Defense mechanisms |
COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCCACA GTGCGAGTGC GCAGCCCACG ACCGTTGCAA GCGTCCGTCA GGTGCGCTTG CGTTACGGCG ACGTCATCGC CCTGGATGGC ATCGATCTGG ACATTCCCGC CGGACGGATG GTCGGCCTGA TCGGCCCCGA CGGCGTGGGC AAATCCAGTC TGCTCTCATT GCTGGCGGGT GTGCGCATCA TCCAGGAGGG CACGGTCGAG GTGCTGGGTG GCGACATGGC CAGCAAGGCC CATCGCAATA AAGTGTGCCC GCGCATCGCC TACATGCCGC AGGGACTGGG CAAAAACCTG TATCCGACGC TCTCGGTCGA GGAGAATCTG CAATTCTTCG CGCGCCTGTT CGGTCATGGC GCCGCAGAGC GCCGCCAGCG GATCGATGAG CTCACCCAGG CCACTGGCCT GTTCAAATTC CTGGAGCGCC CGGCAGGCAA GCTGTCCGGG GGCATGAAGC AAAAACTCGG CCTGTGCTGC GCGCTGATTC ATGACCCGGA TTTTCTGATT CTCGATGAGC CGACGACTGG CGTGGACCCG CTGGCGCGCG CGCAGTTCTG GGATCTGATT GACCGTATCC GCGCCGATCG CCCCGGCATG AGCGTGATCG TGGCCACGGC CTACATGGAT GAGGCCCAGC GCTTCGACTG GCTGGCCGCC ATCGACGACG GCAAGGTCCT CGCCACCGGC ACGCCGAAGG AATTGCTGGC AAGAACAGGC AGCCCGAACC TGGAAGAGGC ATTCATCCGC CTGCTCCCGG AAGAGAAAAA GCGCGGACAC CAAGCGGTAG TCATTCCCCC CTTGTCGGAT GGCGGCGCGG ACGATATCGC CATCGAGGCC GAGGGGCTGA CCATGCGCTT TGGCGACTTC GTTGCCGTCG ATAGCGTGTC CTTCCGCATC CGGCGCGGTG AAATCTTCGG CTTCCTCGGC TCCAACGGGT GCGGCAAGTC CACGACGATG AAGATGCTTA CCGGCCTGTT GCCGGCGAGC GAGGGTCGGG CCTGGCTGTT CGGCCATGAA GTGGACCCGC ATGATCTGGA CACCCGCCGC CGCGTCGGCT ACATGTCCCA AGCGTTCTCG CTCTACAGCG AAATCACGGT ACGCCAGAAC CTGGAGTTGC ACGCCAAACT CTTCAGTGTG TCCCCGGAGG ACATTCCTGC TCGCGTCGAT GAGATGGTGG AGCGCTTCGG GCTGGTGGAC GTCATCGACA GCCTGCCGGC CAGTCTGCCT CTGGGCATAC GCCAACGCCT GTCGCTGGCG GTCGCCATGG TGCACAAGCC AGAACTGCTG ATTCTGGACG AACCGACTTC GGGCGTCGAC CCGGTGGCGC GCGATGCGTT CTGGCGACTG CTCATCGAGC TGTCGCGGCG TGACCGGGTG ACGGTCTTCA TTTCCACCCA CTTCATGAAC GAGGCAGAGC GCTGCGACCG CATGTCGATG ATGCATGCGG GCAAGGTGCT CGACAGCGAC GTGCCCGCCA GACTGGTCGA GAAGCGCGGC GCCAAAACCC TTGAAGAGGC CTTCATCGGC TACCTCGTCG AAGCCGAGGG CGGCACGGCG GCGCCGGCCA GCCAGCCCGG GGCCGCCGAT CACGAGGAGC AACCATCGGC GGCGACCGCT GAACACGGCG GGCACGGCTC TGGCGGTTTC AGTCTGCAGC GCATGTTCAG CTATCTGTGG CGCGAGACGC TGGAATTGCA GCGGGACCCG GTACGCGCCA CGCTGGCGCT GGGCGGTTCG CTGCTGCTGA TGTTCGTGAT CGGCTTCGGC ATCACCATGG ACGTCGAGGA CCTGAGCTAT GCGGTGCTCG ATCGCGACCA GACCACGCTC AGCCAGAGCT ACACGCTGAA CCTGGCCGGC TCGCGCTACT TCACCGAGCA CGCGCCGATC GTAGACTACG ACGATCTCGA CCGGCGGATG CGTAGCGGCG AACTGTCGCT GGCCATTGAG ATCCCCCCTG GCTTCAGCCG CGACGTGTTG CGGGGCCAGA ACGTGCAGAT CGGCGCCTGG CTCGACGGCG CCATGCCGCA ACGCGCGGAA ACCGTGCAGG GCTACGTTCA AGGCATGCAC CAGCACTGGC TACTCGTACA GGCCAGCGAA CGCAGCGGCG CCAGCGCCGC AGGCAATGCG AGCGTCGAGA CGCGCTTTCG CTACAACCCC GATGTCAAGA GTCTGCCAGC CATGGTGCCG GCGGTGATCC CTCTGCTGCT GCTCATGCTG CCGGCCATGC TGACTGCGCT GGCGGTGGTG CGCGAGAAAG AAACCGGGTC GATCACCAAT CTGTACGTGA CGCCGGTCAC GCGCATCGAG TTCCTGCTCG GCAAGCAACT GCCCTATGTC GGCCTGGCCA TGGTGAACTT CCTGCAGATG ACGCTGCTCG CGGTCACCAT CTTTGGCGTT CCGGTCAAGG GCAGCTTTTT CACCCTGGCG CTGGCTGCGC TGATCTTCTC CTTCGCCGCG ACAGGCATGG GGCTGCTGGC CTCGGCCGTC ACACGCAGCC AGATCGCCGC CATGTTCTTT GCCATGATCG GCACGCTCAT ACCGGCCACC CAGTTTGCAG GTCTGATCGA TCCGGTGTCT TCGCTCGAGG GCTCCAGCAA GTTCATCGGG CAGATCTATC CCGCCACGCA CATGATCTCC ATCAGCCGTG GCGTTTTCAG CAAATCACTC GGCCTGGCCG ACCTGACGGG GCCGCTGTGG TCGATGCTCT TGTCGGTCCC GGTCATTCTC GGCGCCGCCG TTTTGCTACT CAAGAAGCAG GAGCGCTGA
|
Protein sequence | MSHSASAQPT TVASVRQVRL RYGDVIALDG IDLDIPAGRM VGLIGPDGVG KSSLLSLLAG VRIIQEGTVE VLGGDMASKA HRNKVCPRIA YMPQGLGKNL YPTLSVEENL QFFARLFGHG AAERRQRIDE LTQATGLFKF LERPAGKLSG GMKQKLGLCC ALIHDPDFLI LDEPTTGVDP LARAQFWDLI DRIRADRPGM SVIVATAYMD EAQRFDWLAA IDDGKVLATG TPKELLARTG SPNLEEAFIR LLPEEKKRGH QAVVIPPLSD GGADDIAIEA EGLTMRFGDF VAVDSVSFRI RRGEIFGFLG SNGCGKSTTM KMLTGLLPAS EGRAWLFGHE VDPHDLDTRR RVGYMSQAFS LYSEITVRQN LELHAKLFSV SPEDIPARVD EMVERFGLVD VIDSLPASLP LGIRQRLSLA VAMVHKPELL ILDEPTSGVD PVARDAFWRL LIELSRRDRV TVFISTHFMN EAERCDRMSM MHAGKVLDSD VPARLVEKRG AKTLEEAFIG YLVEAEGGTA APASQPGAAD HEEQPSAATA EHGGHGSGGF SLQRMFSYLW RETLELQRDP VRATLALGGS LLLMFVIGFG ITMDVEDLSY AVLDRDQTTL SQSYTLNLAG SRYFTEHAPI VDYDDLDRRM RSGELSLAIE IPPGFSRDVL RGQNVQIGAW LDGAMPQRAE TVQGYVQGMH QHWLLVQASE RSGASAAGNA SVETRFRYNP DVKSLPAMVP AVIPLLLLML PAMLTALAVV REKETGSITN LYVTPVTRIE FLLGKQLPYV GLAMVNFLQM TLLAVTIFGV PVKGSFFTLA LAALIFSFAA TGMGLLASAV TRSQIAAMFF AMIGTLIPAT QFAGLIDPVS SLEGSSKFIG QIYPATHMIS ISRGVFSKSL GLADLTGPLW SMLLSVPVIL GAAVLLLKKQ ER
|
| |