Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3299 |
Symbol | |
ID | 5455878 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3528390 |
End bp | 3532124 |
Gene Length | 3735 bp |
Protein Length | 1244 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640878890 |
Product | ribonucleotide-diphosphate reductase subunit alpha |
Protein accession | YP_001414561 |
Protein GI | 154253737 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0441324 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 0.905318 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTATCC AGCGTTGTTT CACCGTCGAG GGTCAGTCGC CATATGAAGG CATCGCCTTC AGGACGACGG CGAGCGAAAT CCGCAATCCC GACGGCTCCG TCGTGTTCCG GCTGCAGGAC ATCCAGGTGC CCGCCGAATG GAGCCAGGTG GCCTGCGACG TGCTGGCCCA GAAATATTTC CGCAAGGCGG GCGTCGCCGC CGTGCTGAAG CGCGTGCCCG AGGCCGGTGT CCCGGCCTTC CTGTGGCGGC AGGAGCCGGA TCATGAGGCG CTCGAGGCGC TGCGGCCGGA AGATCGTTTC GGCCCCGAGA TGGACGCGAG GCAGGTCTTC GACCGGCTGG CCGGCACATG GACCTATTGG GGCTGGAAGG GCGGCTATTT CGACAGCGAG GCCGACGCGC AGGCCTTTTT CGACGAGCAC CGTTTCATGC TGGCGGCGCA GATTGCCGCG CCCAACTCCC CGCAATGGTT CAATACCGGC CTTCACTGGG CCTATGGCAT CGACGGCCCG GCCCAGGGCC ATTGGCGCAC CGACCCCGCC ACCGGCGAAA CCGCGCGCAC GGCCACGGCC TACGAATATC CGCAGCCCCA TGCCTGCTTC ATCCAGAGCG TGAACGACGA TCTCGTGAAC GAGAACGGCA TCATGGATCT CTGGGTCCGC GAGGCGCGGC TCTTCAAATA TGGCTCCGGC ACCGGCTCCA ACTTCTCGGA TCTGCGCGGC GAGGACGAAA AGCTTTCGGG CGGCGGCAAG TCGTCGGGCC TGATGAGCTT CCTCAAGATC GGCGACCGGG CGGCCGGCGC GATCAAATCC GGCGGCACGA CGCGCCGTGC GGCGAAAATG GTGATCGTCG ATATCGACCA CCCGGATGTC GAGGACTTCA TCAACTGGAA GGTGAAGGAA GAACAGAAGG TGGCGGCGCT CGTCACCGGC TCGAAGATCA ACCAGAAACA CCTCAACGCC ATTATGCGCG CCTGCGTGAA TTGCGAGGCG GATGGCGACG CCTGTTTCGA CCCGAAGAAG AACCCCGCCC TCAAACGCGA AGTGCTGGCG GCGCGCAAGG CGCATGTGCC GGAAAACTAT GTGCAGCGCG TGATCCAGTT CGCAAAGCAG GGCTACGACG AAATCGACTT CCGGGTCTAC GACACGGATT GGGACTCCGA GGCCTATCTC ACCGTCTCGG GCCAGAACTC GAACAACACC GTTCGCGTCA CGGATGATTT CCTGCGCGCG GTGGAAGAGG ATGCGGAGTG GTCGCTGAAA AGCCGCCTCA CCGGCGAGGC CACGAAGACC CTGCCCGCCC GCGAACTCTG GGAGCAGGTC GGCCATGCCG CATGGGCGAG CGCCGATCCG GGCATCCAGT ATCACACCAC CATCAACGAC TGGCATACCT GCCCCGCTTC CGGGCCGATC CGCGCCAGCA ATCCGTGCTC GGAATATATG TTCCTCGACG ACACGGCCTG CAACCTCGCC TCGATCAACC TGATGCAGTT CCGCGACGCC GATGGCCGTT TCGATGTCGA GGCGTTTGAG CATGCCGTAA AGCTTCTCAC CATCGTGCTG GAAATTTCCG TCCTGATGGC GCAGTTCCCG AGCCGGGAAA TCGCGGAGCG GAGTTTCCGC TACCGCACGC TCGGCCTCGG CTTCGCCAAT ATCGGCGGCC TGCTCATGTC CTGCGGCCTT GCCTACGATT CAGCCGAAGC GCGCGCACTC GCGGGCGCGA TCAGCGCCAT CATGACCGGC GTTTCCTATG CGACCTCCGC CCAGATGGCG AAGGAACTCG GCGCCTTCGA AGGCTATGCG GAAAATTCCG CTCACATGCT GCGGGTGATG CGCAACCATG CGCGCGCCGC GCATGGCTAC AATGGCGGCT ATGAAGACCT CAGCGTCTAT CCGCTCGCGC TCGACGCAGC AAACTGCCCG CAAGCCGATC TCGTCGATCA CGCCCGCGCC TCCTGGGATC TCGCGGTCTC GATGGGCGAA CGCTACGGCT ATCGCAATGC GCAGGCGACC GTCATCGCGC CCACAGGCAC GATCGGCCTT GTCATGGATT GCGACACAAC CGGCATCGAG CCCGATTTCG CGCTGGTGAA ATTCAAGAAG CTCGCGGGCG GCGGCTATTT CAAGATCATC AACCGCGCCG TGCCGCAGGC GCTCCGCACG CTCGGCTATG ACGCTGCCGC CATCGAGCGG ATCGTCAATT ATGCCGTCGG TTTCGGAACG CTCGCCAATG CGCCGGGCGT GAGCCATGAA CGCTTGCGGG AGCTCGGCTT CACGCAGGAA AAGATCAACA TCGTCGAAGA GGCACTCGCC GGTGCTTTCG ACATCCGCTT CGTCTTCAAC AAGTGGCAGC TTGGCGAGGA ATTCTGCACC GATGTGCTCG GCCTCGATGC CGATGCAATG GACGATCTCG ATTTCGACCT CCTCGCCGCC ATCGGCTTCA CCAAGCAGGA GATCGACGCC GCCAACCTTC ATGTCTGCGG TGCGATGACG CTTGAAGGCG CGCCGGGCCT GAAGGACGAA CACCTTCCCG TCTTCGATTG CGCCAATCCC TGCGGCCGCA TCGGCAAACG CTATCTCTCG GTCGAAAGCC ATATCCGCAT GATGGCGGCG GCGCAGCCTT TCATCTCGGG CGCCATCTCC AAGACCATCA ACATGGCCAA TGCGGCAACG GTCGAGGATT GCAAGGAAAG CTACATGCTG TCCTGGAAGC TCGGCCTGAA GGCGAATGCG CTTTACCGCG ACGGCTCGAA GCTGTCACAG CCGCTCAACT CGCAGCTTCT CGAAGATGAA GCCGATGACG AAGCGGAAGA AAGTGCCGTC GAAACGCTGA TGGCGCAGGC GCCGCAGGAA CGCGCCCGCG TGGTCGCGGA GCGCAGCGTG GCGCAGCTTG TCGAACAGGT GAAGTCGGCG GAGCAGAAGC GCGAGAAGCT TCCCGACCGC CGCAAGGGCT ATACGCAGAA GGCGCTGGTC GGCGGCCACA AGGTCTATCT CCGCACCGGC GAATATGATG ACGGCAAGAT CGGCGAAATC TTCATCGACA TGCACAAGGA GGGCGCCGCC TTCCGCTCGC TGATGAACAA TTTCGCCATC GCGATTTCGC TCGGCCTCCA ATATGGCGTG CCGCTGGAGG AATATGTCGA GGCCTTCACC TTCACGCGCT TCGAGCCGGC GGGCCTTGTC CAGGGCAATG ACCGGATCAA GAATGCGACC TCGATCCTCG ATTATGTCTT CCGCGAACTC GCCGTCTCCT ATCTCGGCCG CTCCGATCTC GGCCATGTCG ATCCGAAGGA ATTCGCCTTC GACGCCATGG GCGACGGTGC CGACGAAGGC AAGGCACCTG CCCTCCCCGC CTCCGCCGTG GTAAGCCCCG GCTACACGCG CAATGCGCAG ATGGGGAACC TTTATCTCGT GCGCGGCGGC GCGGCGGCTA CGGCCCGCGC CGACACGGCG GAAGCCGTCG CCGCGCCCGC GGTCCGCGAG CAGACGGTGA AAGCCGAAGT CATGGCCGCC GGCGCCTTGA TGCGCGCCGG CTCGTCCGAA AGCTTCGCGG CAGTTGCCGT CGGCGCCGTA TCGTCAGGGG GCGGATCATC CGGCGGCGGC ATCAGCCGCG CCGCCGAAGC CCGCATGAAA GGCTATGAAG GCGAAGCCTG CAGCGAATGC GGCAACTTCA CGATGGTCAG GAACGGGACG TGTTTGAAGT GCGATACGTG CGGCGGGACC AGCGGGTGTA GCTGA
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Protein sequence | MRIQRCFTVE GQSPYEGIAF RTTASEIRNP DGSVVFRLQD IQVPAEWSQV ACDVLAQKYF RKAGVAAVLK RVPEAGVPAF LWRQEPDHEA LEALRPEDRF GPEMDARQVF DRLAGTWTYW GWKGGYFDSE ADAQAFFDEH RFMLAAQIAA PNSPQWFNTG LHWAYGIDGP AQGHWRTDPA TGETARTATA YEYPQPHACF IQSVNDDLVN ENGIMDLWVR EARLFKYGSG TGSNFSDLRG EDEKLSGGGK SSGLMSFLKI GDRAAGAIKS GGTTRRAAKM VIVDIDHPDV EDFINWKVKE EQKVAALVTG SKINQKHLNA IMRACVNCEA DGDACFDPKK NPALKREVLA ARKAHVPENY VQRVIQFAKQ GYDEIDFRVY DTDWDSEAYL TVSGQNSNNT VRVTDDFLRA VEEDAEWSLK SRLTGEATKT LPARELWEQV GHAAWASADP GIQYHTTIND WHTCPASGPI RASNPCSEYM FLDDTACNLA SINLMQFRDA DGRFDVEAFE HAVKLLTIVL EISVLMAQFP SREIAERSFR YRTLGLGFAN IGGLLMSCGL AYDSAEARAL AGAISAIMTG VSYATSAQMA KELGAFEGYA ENSAHMLRVM RNHARAAHGY NGGYEDLSVY PLALDAANCP QADLVDHARA SWDLAVSMGE RYGYRNAQAT VIAPTGTIGL VMDCDTTGIE PDFALVKFKK LAGGGYFKII NRAVPQALRT LGYDAAAIER IVNYAVGFGT LANAPGVSHE RLRELGFTQE KINIVEEALA GAFDIRFVFN KWQLGEEFCT DVLGLDADAM DDLDFDLLAA IGFTKQEIDA ANLHVCGAMT LEGAPGLKDE HLPVFDCANP CGRIGKRYLS VESHIRMMAA AQPFISGAIS KTINMANAAT VEDCKESYML SWKLGLKANA LYRDGSKLSQ PLNSQLLEDE ADDEAEESAV ETLMAQAPQE RARVVAERSV AQLVEQVKSA EQKREKLPDR RKGYTQKALV GGHKVYLRTG EYDDGKIGEI FIDMHKEGAA FRSLMNNFAI AISLGLQYGV PLEEYVEAFT FTRFEPAGLV QGNDRIKNAT SILDYVFREL AVSYLGRSDL GHVDPKEFAF DAMGDGADEG KAPALPASAV VSPGYTRNAQ MGNLYLVRGG AAATARADTA EAVAAPAVRE QTVKAEVMAA GALMRAGSSE SFAAVAVGAV SSGGGSSGGG ISRAAEARMK GYEGEACSEC GNFTMVRNGT CLKCDTCGGT SGCS
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