| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3254 |
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| Symbol | |
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| ID | 5456016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3477067 |
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| End bp | 3478122 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640878845 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001414516 |
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| Protein GI | 154253692 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.00411067 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAGCG AGGACTTGGA ATTTGCTTCG GAATGGAGTG CTACGGCGCT CCAGTTGATG
GCGGCTCACG GTATCCCGCC GTCTCCCGAA AATTATTCCA TCTGGTTCCG CTATGTCTCC
GGCAAGCTAC CGGAATTGAA CAAGGAAATC GACGCCTGCA TTGAGAGTGG CCATACCATC
GACATCGAGG TAACCGCTGC GCTGCAAGAC CGGTTCTTTT CCGACGGCAA ACTCGCTGAT
GTGACGCTCA GTACCGGTGC CAAACTCAAT ACCGAAGTCA ATCAGATCCT AAAAATCATC
GAGGAGACAG TCGGCAACTC TACCGCTCTC GGCACCACCG TGCGCGAGGC GAGCGAAGGG
CTGACCAACC AGTCGACACC GAACGACGTT CGTCGCGCGG TCGAGGCCAT TGTTACTGCC
TCGCGGAAAA TGGAAGATCG TAGCGTCGAA CTCGAAGAGC ACCTGCAGGC TACAAAAAAA
GAACTCGATG AATTGCAGCA GAACCTCGAG AAAGCTCATA CGGAGGCACG AACCGACGGC
TTGACCGGCG TCAACAATCG AAAGGCTTTC GACGAGGCGC TAGCCCGCGC GATGGCGGCG
GCTTCAACAA GCAATGCCCC TTTGTGCCTC GCTATCGGCG ATATCGACCA TTTCAAAAAG
TTCAACGACA CGTTCGGGCA TCGGACTGGC GACCAGGTTC TGCGGCTCGT AGCGAACTGC
TTGAAGACAG GCGCTTTGGA GCAGCATTTT GTTGCCCGCT ACGGCGGTGA AGAGTTTGCC
GTCATCATGC CTGCTACCGA TATCGCAACG GCCGAAGCCA TTTCCAACAA AATTCGCGAG
ACGGTGCAGG CCAGGGAACT CGTGAAGCGC TCGACGGGAG AGTCTCTCGG CCGCGTTACC
ATGTCGATGG GTATTGCACT CCTGAGGGAT ACCGACAGCG CCGCTTCACT GATCGAACGA
GCGGACGGTT GCCTTTACGA TGCCAAACAC GCTGGCCGGA ATCGGATCAT CACCGAATGT
CACGGCTTGG AAATGTCACA CGCCAAAGCC AGCTAG
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| Protein sequence | MQSEDLEFAS EWSATALQLM AAHGIPPSPE NYSIWFRYVS GKLPELNKEI DACIESGHTI
DIEVTAALQD RFFSDGKLAD VTLSTGAKLN TEVNQILKII EETVGNSTAL GTTVREASEG
LTNQSTPNDV RRAVEAIVTA SRKMEDRSVE LEEHLQATKK ELDELQQNLE KAHTEARTDG
LTGVNNRKAF DEALARAMAA ASTSNAPLCL AIGDIDHFKK FNDTFGHRTG DQVLRLVANC
LKTGALEQHF VARYGGEEFA VIMPATDIAT AEAISNKIRE TVQARELVKR STGESLGRVT
MSMGIALLRD TDSAASLIER ADGCLYDAKH AGRNRIITEC HGLEMSHAKA S
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