| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3197 |
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| Symbol | |
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| ID | 5454467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3411842 |
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| End bp | 3415261 |
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| Gene Length | 3420 bp |
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| Protein Length | 1139 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640878786 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_001414460 |
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| Protein GI | 154253636 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 73 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACT CGCCCCCCAA ATTCATCCAT CTCCGCCTTC ACTCGGCCTA TTCGCTGCTG
GAAGGCGCGA TCCGCATCAA GGACATCCCG AAGCTCTGCA AGGCGAACGG CATGCCCGCC
ATCGCCCTCA CGGACACGGC CAATCTCTTC GGCGCGCTGG AGTTCTCGGA GACACTCGCG
AAGGAAGGCA TCCAGCCGAT CACCGGCTGC ACGCTCCCCG TCCTTCTCGA TACCTCCGAC
GAGCCGACGC GCGGTCCGAT CCGGCGCGAG CCCTCCGGCA ATCTCGCGCT CCTCGCCAAG
GATGAGCGCG GCTACGAAAA CCTGATGAAG CTGTCGAGCC TCGCCTTTCT CGGGCCGGAT
GCCGCCGAGC CCGCCCATGT CACGATGGAA AAGGTCGAGG AATTCCAGGA AGGCCTGATC
TGCCTCACCG GCGGACCGGA CGGCCTCGTC AACCGCCTCA TAGAGGCGGG CCAGCCCGAT
GCCGCCGCGG AACTTCTGCT GCGCCTCAAG CGCATCTTCG GCGACCGTCT CTATGTCGAG
CTTCAGCGCC ACGATCTTCC CCGCGAGCAA ATCGTGGAAG GCCCGCTGAT AGAACTCGCC
TACAAGCATG AGCTGCCGCT CGTCGCCACC AACGAACCCT ATTTCACGCG CGAATCCGAA
TACGAGGCGC ATGACGCACT GATCTGCATC GCCGCCGGCG CCTATGTCGT GCAGTCGGAT
CGCCGCCGCC TCACGCCGCA GCACCGCTTC AAGTCGCAGG ACGAGATGGC GGCCCTCTTC
GCCGACCTGC CGGAAGCGAT TGAAAACACC GTCGAGATCG CGCGCCGCTG CGCCTATCGT
CCGCAGACCC GCAATCCGAT CCTGCCGAAA TTCGCCGCCG GCACCAGCGA GGCGGACGAG
CTGCGCCGTC AGGCGGAGGA GGGGCTCACC ATGCGCCTCG CGACGCTCGA AGCCGTCGCG
CCGGAAGAGG AGTATCGCGC CCGCCTGAAC TTCGAGCTCG ACGTCATCAT CAAGATGGAT
TTCCCCGGCT ACTTCCTCAT CGTTGCCGAC TTCATCAAAT GGGCGAAGGG GCAGGGCATT
CCCGTCGGCC CCGGCCGTGG CTCGGGCGCG GGCTCCGTCG TCGCATGGGC GCTCACCATC
ACCGACCTCG ATCCGCTGCG CTTCGGTCTC CTCTTCGAAC GCTTCCTGAA CCCCGAACGC
GTCTCGATGC CCGACTTCGA CATCGACTTC TGTCAGGACC GCCGCGACGA AGTGATCCGC
TATGTGCAGG CGCGCTACGG CGAGGACAAG GTCGCTCAGA TCATCACCTT CGGAAAGCTG
CAGGCCCGCG CCGTGCTGCG CGATGTCGGC CGCGTGCTGC AAATGCCCTA TGGACAGGTG
GACCGTCTCT GCAAGCTGGT GCCGAACAAT CCGGCCGCGC CGGTCACGCT GCCTGAAGCC
ATCAAGGGCG AGCCCCGTCT TCAGGAAGAA CAGCGCGCCG ACGAGACGGT GGCGAAGCTT
CTTGAAATCG GCCAGAGCCT CGAAGGTCTC TATCGCCACG CATCGACCCA TGCGGCCGGC
GTCGTCATCG GCGACCGTCC GCTCGATGAG CTGGTGCCGC TCTACCGCGA CCCGCGCTCC
GACATGCCGG TCACCCAGTT CAACATGAAA TGGGTCGAGC CCGCCGGCCT CGTGAAGTTC
GACTTTCTCG GCCTGAAAAC GCTCACCGTC CTGGACCGCG CCGTGAAGCT TCTCGCCCGC
CGCGACATCC AGATCGACCT GCTCAATCTT CCGTTGGCGG ATGAAAAGAC CTTTGCCATG
CTCGGCCGGG GCGAGACGAT CGGTGTGTTC CAGCTTGAAA GCTCGGGCAT GCGCGATGTG
CTGCGCAAGC TGGAGGCCGA CCGTTTCGAG GACATCATCG CCCTTGTCGC GCTCTATCGT
CCCGGCCCGA TGGACAACAT CCCGTCCTAT GTGAAGCGCA AGCACGGAAC CGAAAAGCCG
GACTACCTCC ATCCGCTGCT TGAGCCCGTC CTGAAGGAGA CGCACGGCGT CATCATCTAT
CAGGAGCAGG TGATGCAGAT CGCGCAGATC CTCTCCGGTT ACTCGCTCGG CGAAGCCGAT
CTTCTTCGCC GCGCCATGGG CAAGAAGATC AAGGCCGAGA TGGAGGCCCA AAAGGAGCGT
TTCGTCACCG GCGCCGTCGC CAAGCAGATC GACAAGGCGC AAGCCGCCAG CATCTTCGAA
CTGGTCGACA AGTTCGCGGG CTACGGCTTC AACAAGTCCC ACGCCGCCGC CTATGCGCTC
GTCGCCTATC AGACCGCCTG GCTGAAAGCG AACCACCCGG TCGAGTTCCT TGCCGCTTCC
ATGAGCCTCG ATCTCGGTAA CACCGACAAG CTCGGCCTCT TCAAGCAGGA GGCGGAGCGC
CTCGGCCTGA AGGTGCGCCG TCCCTGCATA AACCGCTCCG AAGGCCTCTT CGGCGTCGCC
GACGGCGAAA TCCTCTATGC GCTCGCCGCC ATCAAGAATG TCGGCCTTCA GGCCATGGAG
CACATCGTGG AGGTTCGCCG CGAGGGCGGC CCCTTCCGCG ACCTCTTCGA TTTCGCGCGC
CGCATCAATC CGCGTCTTAT CAACAAGCGC ACCTTTGAAA ATCTGGCGCG GGCAGGGGCC
TTCGATGCGC TGAACCCCAA CCGCGCCCAG GTGCTCGCCG CCGCCGATCT CCTGCTGGGC
ACCGCGAACG TCGCCGCGCA GGAGCGCGAG AGCAAACAGG TCGGCCTCTT CGGCGAGGAA
AGCGGCGTCG CCGCCGCTCA CCCGGCACTC CCCGCTATCG AGCCCTGGCT GCCGATGGAC
CGCCTCACCG AGGAATTCAA TGCCGTCGGC TTCTATCTCT CCGGCCACCC GCTGGATGAT
TACCGGACCG CCCTTCAGCG CGCGGGCGTC GTGACCTATG CCGAGCTGCT CGGGAAGACC
TCGACGGCGG CCAAGATCGC AGGCACCGTC ACCGCGAAGC AGGAGCGCAA ATCCAAGAAG
GGCAATCCCT TCGCCTTCCT CTCCCTGTCG GACCCGACCG GCCAGTTCGA GATCGTCGTC
TTCTCCGAAG TCCTCGCCCA GTCCCGCCAG CTCATGGAGC CGGGCAGCGC CGTCGTCCTC
AATGTCGAGA TCGAGCGCAT CGGCGAGGAG GTGAAACTCC GCGCCCAGTC GCTCCGCAGC
GTCGACGAGG TCGTGAAGGA CACCGGCGCC GGCCTCAAGA TCTTCATCGA GGATAAGTCC
TCCATCGAGC CCCTGAAATC GCGTCTCGCC GAACGCGGCA AGGGCATCGT CTCCCTCATC
CTCATGACCG AGGGTGGAGG GGAGGTCGAA CTCAAACTGA AAGACCGCTA CCGCGTCACC
CCCCAGCTCC GAGGCGCGAT AAAATCGGTT CCCGGCATCG TCGAGATCCA GGACATATGA
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| Protein sequence | MSDSPPKFIH LRLHSAYSLL EGAIRIKDIP KLCKANGMPA IALTDTANLF GALEFSETLA
KEGIQPITGC TLPVLLDTSD EPTRGPIRRE PSGNLALLAK DERGYENLMK LSSLAFLGPD
AAEPAHVTME KVEEFQEGLI CLTGGPDGLV NRLIEAGQPD AAAELLLRLK RIFGDRLYVE
LQRHDLPREQ IVEGPLIELA YKHELPLVAT NEPYFTRESE YEAHDALICI AAGAYVVQSD
RRRLTPQHRF KSQDEMAALF ADLPEAIENT VEIARRCAYR PQTRNPILPK FAAGTSEADE
LRRQAEEGLT MRLATLEAVA PEEEYRARLN FELDVIIKMD FPGYFLIVAD FIKWAKGQGI
PVGPGRGSGA GSVVAWALTI TDLDPLRFGL LFERFLNPER VSMPDFDIDF CQDRRDEVIR
YVQARYGEDK VAQIITFGKL QARAVLRDVG RVLQMPYGQV DRLCKLVPNN PAAPVTLPEA
IKGEPRLQEE QRADETVAKL LEIGQSLEGL YRHASTHAAG VVIGDRPLDE LVPLYRDPRS
DMPVTQFNMK WVEPAGLVKF DFLGLKTLTV LDRAVKLLAR RDIQIDLLNL PLADEKTFAM
LGRGETIGVF QLESSGMRDV LRKLEADRFE DIIALVALYR PGPMDNIPSY VKRKHGTEKP
DYLHPLLEPV LKETHGVIIY QEQVMQIAQI LSGYSLGEAD LLRRAMGKKI KAEMEAQKER
FVTGAVAKQI DKAQAASIFE LVDKFAGYGF NKSHAAAYAL VAYQTAWLKA NHPVEFLAAS
MSLDLGNTDK LGLFKQEAER LGLKVRRPCI NRSEGLFGVA DGEILYALAA IKNVGLQAME
HIVEVRREGG PFRDLFDFAR RINPRLINKR TFENLARAGA FDALNPNRAQ VLAAADLLLG
TANVAAQERE SKQVGLFGEE SGVAAAHPAL PAIEPWLPMD RLTEEFNAVG FYLSGHPLDD
YRTALQRAGV VTYAELLGKT STAAKIAGTV TAKQERKSKK GNPFAFLSLS DPTGQFEIVV
FSEVLAQSRQ LMEPGSAVVL NVEIERIGEE VKLRAQSLRS VDEVVKDTGA GLKIFIEDKS
SIEPLKSRLA ERGKGIVSLI LMTEGGGEVE LKLKDRYRVT PQLRGAIKSV PGIVEIQDI
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