| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3129 |
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| Symbol | |
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| ID | 5456873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3341776 |
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| End bp | 3343218 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640878719 |
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| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
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| Protein accession | YP_001414393 |
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| Protein GI | 154253569 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.736803 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.276266 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGCG GAACTATTCT CCTAGCAGAC GACGATGCGG CAATTCGTAC GGTGCTCAAT
CAGGCCCTCG GCCGGGTCGG ATACGAAGTT CGCTCGACAG GCAATGCGGC AACCTTGTGG
CGCTGGGTAA GCCAGGGAGA GGGTGATCTC ATTATCACCG ACGTCGTCAT GCCGGATGAG
AATGCCTTCG ATCTGATACC GCGCATCAAG CGCGCGCGTC CGGACCTTCC GATCGTCGTG
ATGAGTGCGC AGAACACGCT CAAGACCGCC ATCATGGCGG CTGAGCGCGG CGCTTACGAA
TATCTTCCCA AGCCGTTCGA TCTGAACGAA CTGATCCGCG TCGTCGACCG GGCTATGACA
GCACCACGCG AACCGGCAAT CGGGCGGCAG CAGCCGGAAG AGGGCGAGAA GATTCCCCTG
ATAGGCCGCT CGCCCGCGAT GCAGGATATC TACCGTGTTC TCGCCCGGTT GATGCAGACA
GACCTCACCG TCATGATCTC GGGCGAAAGC GGCACCGGTA AGGAACTGGT GGCCCGCGCG
CTGCATGATT ATGGCCGCCG CCGGAACGGA CCGTTCGTCG CCGTTAACAT GGCGGCGATA
CCGCGCGAAT TGATCGAGAG CGAGCTTTTC GGCCATGAGA AGGGGGCCTT CACGGGCGCC
AGTCAGCGCG CCACCGGCCG CTTCGAGCAG GCCGAAGGCG GCACGCTCTT CCTCGACGAA
ATCGGCGACA TGCCGATGGA GGCGCAGACA CGCCTCCTTC GCGTTTTGCA GCAGGGCGAA
TACACAACCG TCGGCGGACG CACGCCGATC AAGACCGATG TGCGCATTGT CGCGGCGACC
AACCGGGACC TTCGGCAGCT CATCAACCAG GGATTGTTCC GCGAGGATTT GTTCTTCCGC
CTGAACGTCG TGCCAATCCG CCTGCCGCCC CTGCGCGAAC GCACGGAAGA TATTTCAGAC
CTGATCCGTC ACTTCCTTGG ACAAGCGGAA GACGAGGGCC TGCCGCCGAA GAACATCGAC
TCCGAAGGCA TGGAATTGCT GAAGCGCTAC CGGTGGCCCG GCAATGTGCG CGAGCTCGAA
AATCTCGTCC GCCGCCTCGC TGCCCTCTAC ACGGAGGAAA CGATCGGCGC CTCGATCCTC
GAAACGGAGC TTGCCGAGCC GGACTTTGGA AAGCCCTCCG AGCAACCCTC CATGGATGAG
CCTCTCGCTC AGTCGGTGGA GCGGACGCTC AACCGGATTT TCTCTGGCCA TGGTGACGAC
CTGCCGCCTC CCGGTCTTTA CGACCGGCTG CTGAAGGAGG TTGAGCGCCC GCTGTTCAGT
ATGAGCCTCG CCGCGACGCG CGGAAACCAG ATCAAGGCGG CGCATCTCCT CGGGATCAAC
CGCAACACAT TGCGAAAGAA AATCCGGGAA CTGGACATCC AGGTCATACG CGGACTGAAA
TAG
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| Protein sequence | MPSGTILLAD DDAAIRTVLN QALGRVGYEV RSTGNAATLW RWVSQGEGDL IITDVVMPDE
NAFDLIPRIK RARPDLPIVV MSAQNTLKTA IMAAERGAYE YLPKPFDLNE LIRVVDRAMT
APREPAIGRQ QPEEGEKIPL IGRSPAMQDI YRVLARLMQT DLTVMISGES GTGKELVARA
LHDYGRRRNG PFVAVNMAAI PRELIESELF GHEKGAFTGA SQRATGRFEQ AEGGTLFLDE
IGDMPMEAQT RLLRVLQQGE YTTVGGRTPI KTDVRIVAAT NRDLRQLINQ GLFREDLFFR
LNVVPIRLPP LRERTEDISD LIRHFLGQAE DEGLPPKNID SEGMELLKRY RWPGNVRELE
NLVRRLAALY TEETIGASIL ETELAEPDFG KPSEQPSMDE PLAQSVERTL NRIFSGHGDD
LPPPGLYDRL LKEVERPLFS MSLAATRGNQ IKAAHLLGIN RNTLRKKIRE LDIQVIRGLK
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