| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3108 |
|---|
| Symbol | |
|---|
| ID | 5455308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3318848 |
|---|
| End bp | 3319867 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640878698 |
|---|
| Product | rare lipoprotein A |
|---|
| Protein accession | YP_001414372 |
|---|
| Protein GI | 154253548 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0797] Lipoproteins |
|---|
| TIGRFAM ID | [TIGR00413] rare lipoprotein A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.66001 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.467764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTAT CAATACCAAG AATGGATCGT CGCTGCCAGG CAGCGCCGCG CGCCTTGATC
TACGCAGTGC TTTTTCCGCT GGCATTGTCG CTGGCGGCTT GCGGGACCAG CACCTCGTCG
CAATCTCCCG CGCCGCTCAA GACCGGTGGA GGCATCTACA AGGTTGGAAA CCCCTATCAG
ATCGCCGGCA TCTGGTATTA CCCGCATGAA GACGACAAAT ACGACGCGAC CGGCATTGCC
TCGTGGTACG GCCCGCAATT CCATGGGAAG CAAACCGCGA ATGGAGAAAT ATTCGACCAG
AACGCAATGA CGGCCGCACA TCCGACGCTG CCAATGCCTG TTCTGGCGCG CGTTACGAAC
CTGGAAAATG GCAAGTCGAT TATCGTTCGG ATCAATGATC GCGGCCCCTT CGCCGCCGGT
CGCGAAATCG ACTTGTCGAA GCACGCCGCG GAGCAACTTG GCTTCATGAC GAAGGGAACG
GCCAAGGTTC GCGTCCAGTA TGTCGGGCGG GCCCCTCTGG AGGGCGGCCT CGGCGATGGC
AGGGGCGTAG CCGAGAGTTT TATCGCCCCG CGCGTCGACA CACCGCCTGA GGAAAGACGC
GTAGAGGGAA CAGCGCCTGT GACAAAAGTC GCGACCGTTG CCACAGCCGG CCTGCCGCCG
CCTGCGGGCA CCGTGAGCGC GCCGCTTGCA AGCGCTCCCG CGCCGACGCC TCCCGCCTCG
AATATGGATC CTATTCCGGA TAATCCCGCA GCAAGACCTG AGACGGTGCA GCGTGTGCCG
GTGACGGGAA CCGGTAATCT CTATGTCCAG GCCGGTTCAT TCCAGAATCT CCAGAATGCT
GAATCCGTAA GGCAGCAACT GGCCGGTCTC GGACGCGTGG AGATACAGAC CACGATGGTC
GACGGCACGT CGTTTTACCG CGTTCGCGTC GGACCGCTTT CGGATATCCC CGCCGCCGAC
AGTTCGCTGC AGAATGTGAT TGCCCAAGGA CATAAAGGCG CCCGAATTGT CGTCGATTGA
|
|---|
| Protein sequence | MSVSIPRMDR RCQAAPRALI YAVLFPLALS LAACGTSTSS QSPAPLKTGG GIYKVGNPYQ
IAGIWYYPHE DDKYDATGIA SWYGPQFHGK QTANGEIFDQ NAMTAAHPTL PMPVLARVTN
LENGKSIIVR INDRGPFAAG REIDLSKHAA EQLGFMTKGT AKVRVQYVGR APLEGGLGDG
RGVAESFIAP RVDTPPEERR VEGTAPVTKV ATVATAGLPP PAGTVSAPLA SAPAPTPPAS
NMDPIPDNPA ARPETVQRVP VTGTGNLYVQ AGSFQNLQNA ESVRQQLAGL GRVEIQTTMV
DGTSFYRVRV GPLSDIPAAD SSLQNVIAQG HKGARIVVD
|
|---|
| |