Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3081 |
Symbol | |
ID | 5456929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3289376 |
End bp | 3292891 |
Gene Length | 3516 bp |
Protein Length | 1171 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640878670 |
Product | transcription-repair coupling factor |
Protein accession | YP_001414345 |
Protein GI | 154253521 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.195799 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 0.080304 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAGAAAC TCACCGAAAT CGTCACGGCG CCGGGCCGGC TGACCCTGGG CGAAACGCCC GAGGGCTTCG ATGCGCTGGT GCTGGCCGAT ATGGCCCGCC AGATGCCTGC GGATAGCGGA CTAACGCTGC TCCATGTGGC GCGCGATGAT GCCCGCATGG CCGCGCTGGC CGAGGCGCTC GCCTTCTTTG CGCCGGATAT CGAGATTGAA ATCTTCCCCG CGTGGGATTG CCTCCCCTAT GACCGTGTCT CACCGAACGC GGAGATCAGC GCGCGGCGAA TGGCGGCCCT CTCGCGGCTC GTCGCGAGAG AGCAGAAAGG GGAGGGAAAG CGGCTCATCC TTCTCGCGAC AGTCAATGCG GTTCTGCAGC GTGTTCCCGC GCGCGATACC GTGCGGACCT CCGCCTGGTC GGCGCGAACG GGCAATCGCA TCGATCTCAA TGAGCTCACC GGCTATCTGG CGGCCAATGG CTACAGCCGC ACAGGTACCG TCCGGGAGGC GGGTGAGTTT GCCGTTCGTG GCGGTATCGT CGATATTTTC CCATCCGGAT TTGAACTTCC GGTCCGGCTC GACATGTTTG GCGACACGCT TGATGCCATT CGCAGTTTCG ACGCCGTTAC GCAGCGCACG GTCGGTCAGC TGCATGGGCT CGATCTCGTT CCCGCGAGCG AGGTTCATCT CGACAAGGAA GCCATCCGCC GTTTCCGGGC AGCTTATGTT GCAACGCTCG GCGCGGTGAC CGATGGCGAC CCGCTCTACG AAGCTGTCAG CGAGGGGCGC AAGCATGCCG GTATGGAACA CTGGCTGCCG CTCTTCCATG AACAGCTCGA GACCTTGTTT GACTATGTGC CCGGCGCGTT GGTCACGCTC GATGCGCAGG CGGAGGATGC GAAGGCAGCC CGTCTCGAAC TGATCGGCGA TTACTACGAA GCCCGCGTTG ATGCACGAAA GACGGCCCGC GAAGCCAAGC TCGCTGTCGA CGCCCCAAGC TACAAGCCGC TCAAGCCCGA GGCCCTCTAT CTGACCGAGG AAGAGTGGGG GGCAACGATG GGCGCACATC GCGTGCGTGC CTTGACGCCG TTCAGCGTTC CAGAAACGGC GGGGATAAAT CTCGGCGGCA AGCAGGGCCG CAATTTTGGA CCGGAACGCG CGCAGGATGG CGTGAATGTG TTCGAGGTGC TGGGCGGGCA CATCCTAGGA TTGCGCCGCG CAGGCAAGCG CGTCGCGATA GCAAGCTGGA GCGAAGGCGC TCGGGACCGT CTGCAGCATG TCTTGTCCGA TCATGGTATC GGAAATGTTC TCATCGCCGA TAGCTGGGCG GATGTTAACG GCGTTAACAA AAGCACTGTT TCACTGATTG TTCTCGGACT TGAGGCCGGA TTCGAGACGG ATGAGATCGC GCTGATCAGC GAACAGGATG TGCTCGGAGA CCGCCTTGTC AGGCAGCGCC GCAAAAAAAG AGCGGAAAAC TTCCTCACCG AAGCCTCCAG CCTTTCGCCG GGCGACCTCG TTGTCCATGT CGATCACGGC ATCGGCCGGT TCGAGCGTCT ACAAACCATC GAGGTCATGG GCGCGCCGCA TGATTGTCTG CTCCTCATTT ATCACGGCGG GGACAAGCTC TATCTGCCGG TCGAGAATAT CGAGCTTCTG TCGCGCTACG GCTCTGATGA TTTGGATGCG CAGCTGGACC GCCTTGGCGG CACCGGCTGG CAGGCGCGGA AGGCGCGGCT TAAAGAACGT ATTCGCGAGA TGGCGGGTGA GCTCATCAAG ATCGCTGCCG CGCGTGAGCT CAAAACCGCT CCCGCAATGG AGCCGCAGCC GGGTGCCTAT GACGAGTTCT GCGCGCGCTT TCCCTTCACG GAAACGGAAG ACCAGGAACA GGCAATCGAT GCTGTGCTGG AAGATCTGGC GCGCGGCCGG CCCATGGACC GGCTCGTTTG CGGCGATGTC GGTTTCGGCA AGACTGAAGT CGCCCTGCGG TCGGCCTTCG TCGCCGCTCT CGCCGGTTTC CAGGTTGCCG TTGTCGTTCC GACGACACTT CTTGCGCGAC AACACTACCG GACCTTTGCC GCCCGCTTCC AGGGCTTGCC GGTCAGGGTC CGGCAGATGT CGCGTCTTGT TTCCGCGAAG GACATGGCGG AGGCGAAGGA AGGACTTGCA AGCGGGCAGG TCGATATCGT CATCGGTACG CATGCTCTGC TCGGCAAACA GGTCAAGTTT CGTAACCTCG GTCTGGTGAT CGTGGACGAG GAGCAACATT TCGGAGTCGT TCACAAGGAA CAGTTGAAGA AGCTGCGCGC CGAAGTTCAC GTCCTGACAC TGACAGCGAC ACCGATTCCG CGCACCTTGC AGCTCGCCTT GTCGGGCGTG CGCGAACTCT CTCTCATTGC GACGCCGCCG GTCGACCGGC TTGCCGTCCG CACCTATGTC TCGCCCTTCG ATCCTGTGGT GGTCCGCGAA GCGCTTCTGC GTGAACATTT CCGCGGCGGG CAGAGCTTCT ATGTCGTGCC GCGCATTGCC GACCTTGCGG AAGCAGAAGA GTTCCTTCGG CAGTATGTGC CTGAAGTGAA ATTTGTTTTG GCTCATGGCC AGATGGCGGC GGGTGAAATC GAAGACAAGA TGACGGCCTT CTACGACGGG AAGTACGACG TGCTCGTTTC GACGACCATT GTGGAGTCCG GCCTCGATAT TCCGACCGCC AATACGCTTG TCGTGCATCG AGCCGATATG TTCGGGCTCT CGCAGCTCTA TCAGTTGCGC GGTCGCGTCG GCCGGTCCAA GGCGCGCGCC TATGCATATC TCACTGTGCC TGCGAACCGT ACGCTTACAG CAGGCGCCGA CAAGCGGCTT CGCGTATTGC AGTCGCTCGA CTCGCTGGGC GCGGGGTTCT CTCTTGCAAG CCACGATCTC GATATTCGCG GTGCGGGCAA TCTTCTTGGC GACGAGCAAT CGGGTCATAT CAAGGAAGTC GGATACGAGC TTTACCAGGA GATGCTGGAA GAGGCGGTTG CCTCGATGCG TGGCGGCGGC GCCGGTGCCG ACGAGGAAGG CCATTGGTCG CCTCAGATCA GTGTCGGAAC ACCCGTCCTC ATTCCGGACG GCTATGTGCC GGATCTCGAT GCGCGGATGG CTCTTTACCG GCGGCTTTCC GACGTTGAAA CAAGATCGGA GATCGACGGT TTTGCGGCGG AACTCATTGA CCGTTTCGGC AAGCTTCCGC AGGAAGTCGA GTTCCTGCTG AAGATTGTGG AGATCAAGGG GCTTTGCCGA ACGGCGAATG TGGAAAAGAT CGAAGCGGGC CCGAAAGGCG TCGTACTTTC TTTCCGCGAG AACAGCTTTC CCAATCCAGC CGCGCTTGTC GAGGTCATCA ACGACGAACG CGGCAACGCG AAGCTTCGGC CGGATCACAA GCTTGTCTTC AAGCGCGATT GGGATACGCC GGAAGAGCGC CTTGCCGGCA CGCACCGTCT GATGACGACG CTGGCAAAGC TCGCCGCGCC GGCAAAGGCA GCCTGA
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Protein sequence | MKKLTEIVTA PGRLTLGETP EGFDALVLAD MARQMPADSG LTLLHVARDD ARMAALAEAL AFFAPDIEIE IFPAWDCLPY DRVSPNAEIS ARRMAALSRL VAREQKGEGK RLILLATVNA VLQRVPARDT VRTSAWSART GNRIDLNELT GYLAANGYSR TGTVREAGEF AVRGGIVDIF PSGFELPVRL DMFGDTLDAI RSFDAVTQRT VGQLHGLDLV PASEVHLDKE AIRRFRAAYV ATLGAVTDGD PLYEAVSEGR KHAGMEHWLP LFHEQLETLF DYVPGALVTL DAQAEDAKAA RLELIGDYYE ARVDARKTAR EAKLAVDAPS YKPLKPEALY LTEEEWGATM GAHRVRALTP FSVPETAGIN LGGKQGRNFG PERAQDGVNV FEVLGGHILG LRRAGKRVAI ASWSEGARDR LQHVLSDHGI GNVLIADSWA DVNGVNKSTV SLIVLGLEAG FETDEIALIS EQDVLGDRLV RQRRKKRAEN FLTEASSLSP GDLVVHVDHG IGRFERLQTI EVMGAPHDCL LLIYHGGDKL YLPVENIELL SRYGSDDLDA QLDRLGGTGW QARKARLKER IREMAGELIK IAAARELKTA PAMEPQPGAY DEFCARFPFT ETEDQEQAID AVLEDLARGR PMDRLVCGDV GFGKTEVALR SAFVAALAGF QVAVVVPTTL LARQHYRTFA ARFQGLPVRV RQMSRLVSAK DMAEAKEGLA SGQVDIVIGT HALLGKQVKF RNLGLVIVDE EQHFGVVHKE QLKKLRAEVH VLTLTATPIP RTLQLALSGV RELSLIATPP VDRLAVRTYV SPFDPVVVRE ALLREHFRGG QSFYVVPRIA DLAEAEEFLR QYVPEVKFVL AHGQMAAGEI EDKMTAFYDG KYDVLVSTTI VESGLDIPTA NTLVVHRADM FGLSQLYQLR GRVGRSKARA YAYLTVPANR TLTAGADKRL RVLQSLDSLG AGFSLASHDL DIRGAGNLLG DEQSGHIKEV GYELYQEMLE EAVASMRGGG AGADEEGHWS PQISVGTPVL IPDGYVPDLD ARMALYRRLS DVETRSEIDG FAAELIDRFG KLPQEVEFLL KIVEIKGLCR TANVEKIEAG PKGVVLSFRE NSFPNPAALV EVINDERGNA KLRPDHKLVF KRDWDTPEER LAGTHRLMTT LAKLAAPAKA A
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