| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3068 |
|---|
| Symbol | |
|---|
| ID | 5455673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3274955 |
|---|
| End bp | 3276241 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640878657 |
|---|
| Product | sporulation domain-containing protein |
|---|
| Protein accession | YP_001414332 |
|---|
| Protein GI | 154253508 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGTT TGATGCGCGG CGGAAGGCGA GGAATTGCCA TTTCCCTGCT TGTAATGCTT
GTGGCCCTGT TGCTCCCGGC GCCCTATCCG GCGAGCGCGA GCAGCGCGGA GGATGAAGCC
GCAGCCTTGA TGAAGGCGGG GGCGGATTCC ATCGAACGCG GCCAGTACGA CAAGGCAGCC
GTCGACTTCT CGAATGCACT TGATAGTGGC GGGCTGACGC CGGAAGGCCG CGCTCTCGCC
TATCACCACA GGGGCGTCTC ATTTCTGAAG GTCGGCCAGC AGGATGCGGC CATTGCCGAT
TACACCCGCG CCATTACCGC GAATGCGCTG CCGGCCATGG TGCTGGCACG GGCCTATTAC
AATCGCGGCA TTGCCTATAG TAACACGGGC AAGGTGGATG CCGCCGAGCG CGACTATCTC
AAGACCATCG AGCTGACGCC GGATTACGCT GCGGCCTATC ACAATCTCGC AAACCTGGAG
CGGCGGCGTC ATGCCTATGA CGACGCGATC CTCCATTACA CAGCGGCGAT CGACAACATG
CAGGGTAGGG AGCGGAAGCT ACCGCTCTTT GGGCGAGCCC TGGCGCTGGA GCAGTCGGGC
GATCTTGAGC GTGCCGCCGC CGATTTGAGG CAGGCGCTCA TCCTCGATCC GGAATTCGAG
CTCGCCCAAG CGAAGCTCAC GGCGATCTCG CCGCAGCTTG CCGCTGTCGA CGAGCTGCCG
TCCGCAGCGG CACAGAGCGA AGAAGCTGAA CTTTCCCCTC AGATTGTGCC GTCCACCGTG
GCGCCGTTCC AGACCGCTGC ATCCGGTCAG GAAGCAGGAA AAGTCATCAG GATCGCCAGC
GTCGGGGGAT GGAGGACGAC GGCGACCCGT TTTCCGGCGC CGGAGCCCGC AGCGAAGGCC
ATGGCGGCGG CCGACGGCAA TGACACCCTC GTAACCGGCT CGCTCAGGCC AGCGGAAGCA
CTTCCCGCAC CCGAACACAG CCCGGCAGCT GCAAAGCAGG CCGCTGCCGC TTCGAAAAGC
CCGTCATCCG CCGAGCAAGC GCGCTACCGT CTGCAGCTTG GCGCTTTCAG GGAACCGGAC
GTGGCAGCAC AGGCATGGGA AGAAATTTCG AGGCAGGCGC CGGGCATTAT TGGCCGCTTC
GATTACGCCA TCCAGAAAGC AGATCTCGGG TCACGCGGCA TCTTCTATCG GCTGAGAGCC
GGCGGCTTTG CAGGGATTGG CGAAGCACGG ACTACATGCA AATCGCTCGA AGCGCACAAG
ATCGAGTGCA TTGTCGTTGA TGGCTAG
|
|---|
| Protein sequence | MRRLMRGGRR GIAISLLVML VALLLPAPYP ASASSAEDEA AALMKAGADS IERGQYDKAA
VDFSNALDSG GLTPEGRALA YHHRGVSFLK VGQQDAAIAD YTRAITANAL PAMVLARAYY
NRGIAYSNTG KVDAAERDYL KTIELTPDYA AAYHNLANLE RRRHAYDDAI LHYTAAIDNM
QGRERKLPLF GRALALEQSG DLERAAADLR QALILDPEFE LAQAKLTAIS PQLAAVDELP
SAAAQSEEAE LSPQIVPSTV APFQTAASGQ EAGKVIRIAS VGGWRTTATR FPAPEPAAKA
MAAADGNDTL VTGSLRPAEA LPAPEHSPAA AKQAAAASKS PSSAEQARYR LQLGAFREPD
VAAQAWEEIS RQAPGIIGRF DYAIQKADLG SRGIFYRLRA GGFAGIGEAR TTCKSLEAHK
IECIVVDG
|
|---|
| |