| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3054 |
|---|
| Symbol | |
|---|
| ID | 5455817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3258792 |
|---|
| End bp | 3259931 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640878642 |
|---|
| Product | queuine tRNA-ribosyltransferase |
|---|
| Protein accession | YP_001414318 |
|---|
| Protein GI | 154253494 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
|---|
| TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0377683 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGT TCAAATTCAC CCTCGCCGCC ACCGACGGCC GCGCCCGCAC CGGCGCCATC
GACACGCCGC GTGGGACTAT CCGCACGCCC GCCTTCATGC CGGTCGGCAC CGCCGCCACC
GTCAAGGCGC TATATCCCGA GCAGGTCCGC GCCACCGGCG CCGACATCGT GCTCGGCAAT
ACCTATCATC TGATGCTCCG CCCCGGCGCG GAGGAGATCG CGGCGCTGGG CGGCCTCCAT
TCCTTCATGA ACTGGCCGCA TCCGATCCTC ACCGATAGCG GCGGCTTCCA GGTCATGTCG
CTCTCCAAGC TCCGCAAGAT GACGGAGGAG GGCGTCACCT TCCAGTCGCA TCTCGACGGC
TCGCGCCATC TCCTCTCGCC CGAGCGCAGC ATCGAAATCC AATGCCTGCT CGGCTCCGAC
ATCCAGATGC AGCTCGACGA ATGCACGCCC TTTCCGGCGA CGGAGGCGGA AGCGAAGAAG
TCGATGGAGC TGTCGCTGCG CTGGGCCGCG CGCTCCAAAT CCGCCTTCGA GGCACAGCCC
CACCGCACCG AAGGCATGGC GCTTTTCGGC ATCGTGCAGG GCAGCACCTA TGAGCCGCTC
CGCAAGGCGT CTGCCGCCGG CCTGCAGGAG ATCGGCTTCG ACGGTTACTC GGTCGGTGGT
CTCGCGGTCG GCGAGGGCCA GGCGGAAATG CTCCGCGTTC TCGATTTCAC GACCCCCGCG
CTTCCCGAAA ACAAGCCCCG CTACCTCATG GGCGTCGGCA CGCCGGACGA CCTCGTGGAA
TCCGTCGCGC GCGGTATCGA CATGTTCGAT TGCGTGATGC CGACGCGGAA TGGCCGCCAC
GGCCTCGCCT TCACCTCGCG CGGCAAGGTG AACCTGAAGA ATGCGCGCCA CGCCGCCGAC
AAGCGCCCCC TCGACGAGAC CAGCACATGC CCCGCCGCGC GCGATTATTC ACGCGCCTAT
CTTCATCACC TCATCAAGTC GGGCGAGATG CTCGGCTCCA TGCTGGTGAG CTGGATCAAC
GTCCATTACT ACCAGTCCCT CATGGCCGGT ATGCGCGCCG CCATCGCCGA GCAGCGTTTC
GCGGCCTTCG TCGCCGATTT CAAGGCGGCG CAGGCCGGTG GCGACATCGA GCCCCTTTGA
|
|---|
| Protein sequence | MSQFKFTLAA TDGRARTGAI DTPRGTIRTP AFMPVGTAAT VKALYPEQVR ATGADIVLGN
TYHLMLRPGA EEIAALGGLH SFMNWPHPIL TDSGGFQVMS LSKLRKMTEE GVTFQSHLDG
SRHLLSPERS IEIQCLLGSD IQMQLDECTP FPATEAEAKK SMELSLRWAA RSKSAFEAQP
HRTEGMALFG IVQGSTYEPL RKASAAGLQE IGFDGYSVGG LAVGEGQAEM LRVLDFTTPA
LPENKPRYLM GVGTPDDLVE SVARGIDMFD CVMPTRNGRH GLAFTSRGKV NLKNARHAAD
KRPLDETSTC PAARDYSRAY LHHLIKSGEM LGSMLVSWIN VHYYQSLMAG MRAAIAEQRF
AAFVADFKAA QAGGDIEPL
|
|---|
| |