Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3004 |
Symbol | |
ID | 5456246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3204860 |
End bp | 3206254 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640878592 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_001414268 |
Protein GI | 154253444 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 0.599739 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGAC CCACTAAGTC CCTGAGCCGC CTCCTTTCGC TCGCCCTCGG CACGACGGCC CTGACAGGCT TTCTTGCCGT TACGCCGGCT TCCGCCGAAA ACCTCATCGA TGCCTTGACC GCGGCCTATG CCACCAACCC GACACTGCAG GCGCAGCGCG CCCAGTTGCG CGCCACCGAC GAACTGGTGC CGCAGGCGCT GTCCGGCTGG CGGCCCAACC TGCAGGCGCA GGGCGCATAT GGCGTTACCA GCACCGACAC CACGCTCAAT AACGGCGCCA GCGCGCGCGA CGATCTCCGT CCGCTTTCCG GTTCCGTCAC GCTCAGCCAG AACCTCTTTG CGGGCGGGCG CACGGTCAAC GCGACCGATC AGGCCGAGGC CTCGGTGCAG TCCGGCCGCG AGTCGCTGCT GAGCGTCGAG CAGACGACGC TGCTGAATGC CGTGCAGGCC TATATGAACG TGATCCGCGA TCAGAGCGTT CTTGAGCTCA ACCGTAACAA CGTTGAAGTG CTGAAACGCC AGCTCGATGC GACAACGGAC CGTTTCCGTG TCGGCGAGCT CACGCGCACG GATACCGCCC AGTCGGAAGC CCGTCTCAGC CTTGCCCGCT CCAATCTCAT CGCCGCCGAG GCGCAGCTCA CTGCGAGCCG CGCCTTCTAC GAGCGCATCG TCGGCCAGCT TCCGGGCACG CTTGAGAAGC CGAACCGTCT CGAGGGACTG CCGGCCACCG AGGAAGAAGC CAGGGCACTG GCCGCGCAGA ACAACCCGTC ACTGCGTGCC GCGCGCTATT CGGAAGAAGC GAGCCGTGAG GCGATCAAGG TTGCCAAAGG TGCGCTGCTG CCGAGCTTCG ACGTTCAGGC CCAATACCAA TATGGCCGTG ATCCCTCGTC CACGATCCGC GATGTCGAGG AAAGCTCGCT GCTCGGCGTG CTGACCATCC CGCTCTACCA GAGCGGCGTC GAGTATTCGC GGGTCCGCGA GGCGAAGGAA ATCAACAATC AGAGCCGCCT CCAGATCTAT GCCGTGCAGC GCCAGGTCGA TGAAGCGGTG CGGAATGCCT GGGAGCAGCT TCGCGCCAGC CGCGCCAGCA TCACTTCCAC CTCCGAGCAG GCCAATGCGA GCAATATCGC GCTGGAAGGC GTGCGGCAGG AATCCGAAGT GGGCGCCCGC ACCACGCTCG ACGTGCTCGA TGCGGAGCAG GAATTCCTGA ATGCGCGCGT TGCGCTGGTC AGTGCCGAGC GCGATCTGGC GGTCGCCGAA TATGGGCTTC TCGCCGCGAT GGGCCAGTTG ACGGCGCGCA ATCTTGAATT GCCGGTCGAG TATTACGATC CCGAAGCGAA TTATGGCGAG GTCCGCAACA AGTGGATCGG CTTCGGTACC GCCAGCGGCG AATAG
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Protein sequence | MKRPTKSLSR LLSLALGTTA LTGFLAVTPA SAENLIDALT AAYATNPTLQ AQRAQLRATD ELVPQALSGW RPNLQAQGAY GVTSTDTTLN NGASARDDLR PLSGSVTLSQ NLFAGGRTVN ATDQAEASVQ SGRESLLSVE QTTLLNAVQA YMNVIRDQSV LELNRNNVEV LKRQLDATTD RFRVGELTRT DTAQSEARLS LARSNLIAAE AQLTASRAFY ERIVGQLPGT LEKPNRLEGL PATEEEARAL AAQNNPSLRA ARYSEEASRE AIKVAKGALL PSFDVQAQYQ YGRDPSSTIR DVEESSLLGV LTIPLYQSGV EYSRVREAKE INNQSRLQIY AVQRQVDEAV RNAWEQLRAS RASITSTSEQ ANASNIALEG VRQESEVGAR TTLDVLDAEQ EFLNARVALV SAERDLAVAE YGLLAAMGQL TARNLELPVE YYDPEANYGE VRNKWIGFGT ASGE
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