Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3000 |
Symbol | |
ID | 5456388 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3200630 |
End bp | 3201190 |
Gene Length | 561 bp |
Protein Length | 186 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640878587 |
Product | polysaccharide export protein |
Protein accession | YP_001414264 |
Protein GI | 154253440 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.912736 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 0.44921 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCCC GTCTCGCACT CGTCTTGATG GTCATCGGCG CCTTTGCCGC CGGCTGCGCG GAGCGCGGCC TGATCGCGGA GCGCCCGATC GTCCCGGAAA GCGAAATCTA CCGGCTGGAC ACGGGCGACC AGCTTCGCGT TGTGGTGTTC GGACAGAGCG ACCTCAGCGG CGATTTCACG GTCGACGGTA CGGGCGCGAT CTCGATGCCC TTGCTGCCGC CGCTTGTTGC GCGGGGAATG ACGACGGATG AGTTCGAGCG TGCCGTTGCG GACGAACTAG GCGCAAAACT GCTGCGCAAC CCGAATGTCA GCGTCCAGGT CACGCAGTTC CGGCCCTTCT TCATTCTCGG CGAGGTTCAG CGCGCCGGGC AATATCCCTT TGTAAACGGC ATGACGGTGC AGAGCGCCGC GGCCATTGCC GGCGGCTTCA CCTATCGGGC GGATGCCGAC CGGGTGAAGA TCACCCGCAA CCGGGGCGAC CGTATCGTCG AACTCGGCGT CGACAGCAAT GCGCCGGTAA TGCCGGGAGA TACGATCCTT GTGAAGGAGC GCTATTTCTG A
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Protein sequence | MNARLALVLM VIGAFAAGCA ERGLIAERPI VPESEIYRLD TGDQLRVVVF GQSDLSGDFT VDGTGAISMP LLPPLVARGM TTDEFERAVA DELGAKLLRN PNVSVQVTQF RPFFILGEVQ RAGQYPFVNG MTVQSAAAIA GGFTYRADAD RVKITRNRGD RIVELGVDSN APVMPGDTIL VKERYF
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