| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2943 |
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| Symbol | |
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| ID | 5455833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3139547 |
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| End bp | 3141541 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640878526 |
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| Product | poly(R)-hydroxyalkanoic acid synthase, class I |
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| Protein accession | YP_001414207 |
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| Protein GI | 154253383 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG3243] Poly(3-hydroxyalkanoate) synthetase |
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| TIGRFAM ID | [TIGR01838] poly(R)-hydroxyalkanoic acid synthase, class I |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000122765 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.00212839 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCTGA AAGATACGTC CCCCGCAGCG CCCGCCGCCG CTCGAAAAGG CGCCTCCACC
AAGCCCCGCC CCCCGAAAAA GCCCCGTGCG CCGCGCCGGA AAGCCGCCCC CCTCTCCGAA
GCCCTGCCCG GGCCGGAGGC CGAGGCGCCC GCCCCCACGG AAGGCATCTC CGCCAAATTC
GCGCCGGACC CGAAAGCCGC CGCCGCCCGG GATTATGTAA TGCCGGACCT CGGCGCCCTC
GCGGTCAATC TTCTCAAGGC CGCCGGCATG GGCCAGAAGG CCGCCCGCCA GTTGATGCAG
AGCGACGATT CGTCGGATGC CAGCCACACC CTCCACGATC TGGAGCGCGT CGGCCGCGCC
CTCATGGAAG TCGCCGGCAG CTATATCCGC AATCCCGCCC GGATTTTCGA GGCGCAGGCC
GCCCTCTGGG AAGGCTATAT GAGCCTTGCC GGCTCCATGA CGCGCCGCTT CCTGCTGGGC
GAGGAAGTGC CCCCCGTCGC GCAGCCGGGC CGCAGCGACA AGCGTTTCCG CGATCCCGAC
TGGCAGGAAA ACATCGTCTT CGACCTGATG AAGCAGTCCT ACCTGCTCAC CAGCAAATGG
CTCACCGACC GCGTGAAGCA GGCCGAGGGC GTCGATCCGC ATACGCGCGA AAAGGCCGAC
TTCTATGTCC GCCAGATGAC GAACGCCATG TCGCCCTCGA ACTTCCTCTT CACCAACCCG
GAAATCCTCC GCGCGACGCT CGCCTCCAAC GGCGAGAACC TCGTCGCCGG CATGGAGCAT
CTGCTGGAGG ATATCGAGCG CGGCCACGGC CACATCCAGA TCCAGCAGAC CGATATGTCC
GCCTTCCGCC TCGGCGAGAA TATCGCGACC ACGCCGGGCA AGGTCATCTA CCAGAACGGC
CTGATGCAAT TGATCCAGTA CGAGCCGACG ACGGAGAAGG TCCACAAGCG CCCGCTCGTC
ATCTTCCCGC CCTGGATCAA CAAATATTAC ATCCTCGATC TCACGCCCGA GAAGTCGCTC
ATCAAATGGT GTCTCGACAA GGGCTACACC GTCTTCGTCG CAAGCTGGGT GAACCCGGAT
GCGCGCCTCG CGCTGAAAAC CTTCGAGGAT TACATGATCG AAGGCGTCTA CGCCGCGCTC
AATGCCGTCG AGCAGGCAAC CGGCGAAACC GAGGTAAACG CGGTCGGCTA CTGCATCGGC
GGCACGCTGC TCGCCTGCTC CCTCGCCCAT ATGGCGGCGC GCAAGGACAC CCGCATCAAA
TCGGCGACCT TCCTCGTCAC GCAAGTGGAT TTCACGGAAG CCGGCGAGCT GAAAGTCTTC
ATCGACGAGG AACAGATTTC CGACATCGAA AAGCAGATGC ACCAGAAGGG CGGCTACCTG
AAGGGGTCCA CCATGGCCTC CACCTTCAAC ATGCTCCGCT CCAACGACCT CATCTGGAAC
TACGTCGTCA ACAACTACCT GCTCGGCCGC GAGCCCATGC CCTTCGACAT CCTCTACTGG
AACGCGGACG CAACGCGCCT GCCCTCCGCC ATGCATGTCG GCTATCTGCG CGAATGCTAC
CTCGAAAACA AACTCGCCGA AGGCCGCATG ATCCTCGGCG GCGAGGAACT GCATCTCGAC
AAGGTGAAAG TCCCCGTCTA CCTGCAGTCG AGCCGCGAGG ATCACATCTC GCCCTATAAC
TCCGTATACA AAGCAACGAA ACTCTTCGGC GGCCCGGTGC GCTTCATCTG CGCCGGCTCC
GGCCACATCG CCGGCGTCAT AAACCCGCCC GCCGCCGGCA AATACAACCA CTGGCTGAAT
GACGACCTCC CCCCCACCCC CGACGAATGG TTCGCCGGCG CCACCGACCA CAAGGGCTCC
TGGTGGCCCG ACTGGGAAAC CTGGCTCGCC GAAAAGTCAG GCCCCATGGT CGCCGCGCGC
AAACCCGGCA GCGGCAAACT CAAGGTGCTG GAGGACGCGC CGGGGTCATA TGTGCTGGTG
AAGTCGGAAG ACTGA
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| Protein sequence | MSLKDTSPAA PAAARKGAST KPRPPKKPRA PRRKAAPLSE ALPGPEAEAP APTEGISAKF
APDPKAAAAR DYVMPDLGAL AVNLLKAAGM GQKAARQLMQ SDDSSDASHT LHDLERVGRA
LMEVAGSYIR NPARIFEAQA ALWEGYMSLA GSMTRRFLLG EEVPPVAQPG RSDKRFRDPD
WQENIVFDLM KQSYLLTSKW LTDRVKQAEG VDPHTREKAD FYVRQMTNAM SPSNFLFTNP
EILRATLASN GENLVAGMEH LLEDIERGHG HIQIQQTDMS AFRLGENIAT TPGKVIYQNG
LMQLIQYEPT TEKVHKRPLV IFPPWINKYY ILDLTPEKSL IKWCLDKGYT VFVASWVNPD
ARLALKTFED YMIEGVYAAL NAVEQATGET EVNAVGYCIG GTLLACSLAH MAARKDTRIK
SATFLVTQVD FTEAGELKVF IDEEQISDIE KQMHQKGGYL KGSTMASTFN MLRSNDLIWN
YVVNNYLLGR EPMPFDILYW NADATRLPSA MHVGYLRECY LENKLAEGRM ILGGEELHLD
KVKVPVYLQS SREDHISPYN SVYKATKLFG GPVRFICAGS GHIAGVINPP AAGKYNHWLN
DDLPPTPDEW FAGATDHKGS WWPDWETWLA EKSGPMVAAR KPGSGKLKVL EDAPGSYVLV
KSED
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