| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2887 |
|---|
| Symbol | |
|---|
| ID | 5454960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3090967 |
|---|
| End bp | 3091905 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640878469 |
|---|
| Product | MotA/TolQ/ExbB proton channel |
|---|
| Protein accession | YP_001414151 |
|---|
| Protein GI | 154253327 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1291] Flagellar motor component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.000634442 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCTG AGGCGGGGCG GGCCTGCTGC GCGGCTGGAT GGCCGTGGAT CACGTACAAG
AGAGTGCTTG GGCATATGCG GCTCATTGTC GGCATCGCGG TAGTATTGTT GAGTGTGTTC
GGGGGCTACG CCGCTATGGG CGGCCACCTC GAGGTACTTT GGCAGCCATT CGAGGCTGTC
ATCATCCTCG GTGCCGCCTT CGGCGCATTC TGCATCGCCA ATCCGCCTTC TGTGCTGAAG
GCGGTCGGCG GCATTTTCGG CACCCTTTTC AAAGGCCCCC GCTACGACAA GGCCGCCTTC
CTTGAACTGC TCGGCCTTCA ATACACCCTC TTCAAGCTCG CCAAGAGCAA AGGCAACCTT
GCCCTCGAAG CCCATGTCGA AAACCCCGGC GAAAGCACCA TCTTCGCCCA GTTCCCCAAA
TTCTCCGCCG ACCATCACGC CGTTGAATTC ATGTGCGACT ACCTGCGCAT GATCACGCTT
GGCACCGAAA ACGCGCATGA GCTCGAGTCG CTGATGGACG AGGAACTCGA AACCCATCAC
CAGGAACGTG AGCGCATCGT CAGCGCCATG CAGGCGCTCG CCGACGGTAC ACCCGCTCTC
GGCATCGTCG CCGCCGTGCT CGGCGTCATC AAGACCATGG GCTCGATCGA CCAGCCGCCC
TCCGTTCTCG GCGGCCTTAT CGGCGGCGCC CTTGTCGGCA CCTTCCTCGG CGTCTTCGTC
GCCTACGGCT TCTTCGGCCC AATGGCGCAG TCGCTCCGCA ATACCTACGA AGCGGAATCG
AAATATTTTC TCTCGATGAA GGCGGGCCTC CTCGCCCACA TGGCCGGCTA CGCGCCGGCC
GTCTCCATCG AATTCGCGCG CAAGGCGCTG ATGTCGGAAG TCCGTCCCAC CTTCATCGAA
GTGGAACAGT CCACCGCCGC CCTGCAGCCC GCCGCCTGA
|
|---|
| Protein sequence | MAAEAGRACC AAGWPWITYK RVLGHMRLIV GIAVVLLSVF GGYAAMGGHL EVLWQPFEAV
IILGAAFGAF CIANPPSVLK AVGGIFGTLF KGPRYDKAAF LELLGLQYTL FKLAKSKGNL
ALEAHVENPG ESTIFAQFPK FSADHHAVEF MCDYLRMITL GTENAHELES LMDEELETHH
QERERIVSAM QALADGTPAL GIVAAVLGVI KTMGSIDQPP SVLGGLIGGA LVGTFLGVFV
AYGFFGPMAQ SLRNTYEAES KYFLSMKAGL LAHMAGYAPA VSIEFARKAL MSEVRPTFIE
VEQSTAALQP AA
|
|---|
| |