| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2884 |
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| Symbol | |
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| ID | 5454307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3087538 |
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| End bp | 3089397 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640878466 |
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| Product | TrkA domain-containing protein |
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| Protein accession | YP_001414148 |
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| Protein GI | 154253324 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.00123208 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAATCG CTTTCGCCTG GCAGATGTGG GTGACCTATG GCCTGATCCT GGTCGCGGTC
CTGCTTTTCA GCATTGAACG GATTTCGCTC GAGCTCTCCG CGCTCGGCAT TCTCGTTTTC
CTGCTCGTCT TCTTCTATCT CTTCCCCGTC ACCGGCCCGG CGGGACAAAA CCTCTTGAGT
TCCACCGCAT TGCTGGCGGG CTTCGCCAAT CCCGCACTCA TCGCCGTCCT CGCGCTCCTG
GTCGTCGGCC ACGGCATGTT CCAGACCGGC GCGCTCGATG GCGCCGCGCG TTCCGTCGCC
GATCTCGGCT CCACGCGCCC TGGCCTCACC ATCTTCTGCA CCTTCCTTCT GGTCGCCGTC
ATCAGCGCCT TCCTGAACAA CACCCCGGTC GCGGTGATGT TCATCCCCGT CCTCGCCACG
CTGGCGGGCC GCTTCGGCCA GCGCGCGCCG AAGGTGATGA TGACCTTGAG CTTCGTCTCG
ATCCTCGGTG GCATGACAAC GCTTATCGGC TCCTCGACAA ACCTCCTCGC GGCGGGCGTC
GTGATGACAT CGCACCTCCC GCCCATCGGC ATTTTCGACT TTGTCGTCCC CGGTATGTTT
CTCGCCGCGA TCGGCTTCCT CTACGCCACG CTCGTCGTGC CGCATCTCCT GCCGGATCGC
GGCGGCGCCG TCGATCTCTC GGGCCCTGAA GCCGGGGGCG GCAAGCAATA TATCGCCCAG
CTCGAAATCA CCTCCGGCCA TCCCCTTGTC GGCGTCAGTT CCGTTGCCGG CCTCTTCCCG
CCGCTCCGCG ACATGACGGT CCGCATGATC CAGCGCGGCG AACACCCGAT CCTGCCGCCC
TTCGAGGACG TGACGCTCGT CCCCGGCGAT GTCGTCATCG TCGCCGCCAC CCGCCAGACA
TTGACCGAAG CCCTGAAGTC CGGCTCGCGC ATATTCGAAG GCATGCTTGA GGAGCGTTTC
GCCGAAGGTC TCGACACGAG CGAAGGCCCC GCGAAGCCCG GCGGCGAGCT CGTCCTTGCC
GAAACCGTGG TCGCGCCCGG CTCCCGCATG ATCGGCCAGA CCATCGAGCA GATCGCCTTC
CGCCACCAGA CCGGCTGCAT CGTTCTCGGC ATCCAGCGCC GCAGCCGCAT GATCCGCACC
CTGCTGAACG ACATTCGGCT CGAAGCGGGC GACGTGCTGC TCGTTCTCGG CAAGGGCGCC
CAGGTGCAGG ACCTCCGGCA CAATCGCGAC GTCCTCCTCC TCGAATGGTC GGCAACCGAA
CTGCCGGACC CGAAATTCGC CCGCCGCGCC CTCGCCGTCT TCGGCATCAT GGTCGCCACC
GTCTTGACCG GCCTTGTCCC CATCGAGATC GCCGCCGTTG GCGCCGCCGC CGCCATCATC
GCAACCGGCG TCCTCAACGT GCGCCAGGCC GCCCGCGCGA TAGACCGGCG GATATTTCTC
ATGGTCGGTG CCATGCTCGG CGTCGCCGCC GCCCTCGACG CGACAGGCGG CGCCCGCGCC
ATCGCCGAGG CATCGGTGCT GGTCTTTGCC GGCTACGGCG TCCCGGTCAT TCTCTCGGCC
TTCTTCTTCG CCACCGCCCT CACCACCAAC GTCCTCACCA ACAATGCCAC CGCCGTCCTG
TTCACACCCA TTGCCATCAG CACGGCAACG CAGCTCGGCG TCGATCCCCT GATCTTCGTC
TACGCGGTCA TCTTCGCCGC CAACTGCTCC TTCGCCACAC CCATGGGCTA CCAGACCAAT
CTTCTGGTTA TGGGACCTGG CCATTATGAA TTCAGGGATT TCGTCCGCGC CGGAACACCC
CTCGTCATTC TGCTCTGGCT GGCCTATTCT TTCTTCGCGC CCTGGTATTA TGGGCTCTGA
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| Protein sequence | MEIAFAWQMW VTYGLILVAV LLFSIERISL ELSALGILVF LLVFFYLFPV TGPAGQNLLS
STALLAGFAN PALIAVLALL VVGHGMFQTG ALDGAARSVA DLGSTRPGLT IFCTFLLVAV
ISAFLNNTPV AVMFIPVLAT LAGRFGQRAP KVMMTLSFVS ILGGMTTLIG SSTNLLAAGV
VMTSHLPPIG IFDFVVPGMF LAAIGFLYAT LVVPHLLPDR GGAVDLSGPE AGGGKQYIAQ
LEITSGHPLV GVSSVAGLFP PLRDMTVRMI QRGEHPILPP FEDVTLVPGD VVIVAATRQT
LTEALKSGSR IFEGMLEERF AEGLDTSEGP AKPGGELVLA ETVVAPGSRM IGQTIEQIAF
RHQTGCIVLG IQRRSRMIRT LLNDIRLEAG DVLLVLGKGA QVQDLRHNRD VLLLEWSATE
LPDPKFARRA LAVFGIMVAT VLTGLVPIEI AAVGAAAAII ATGVLNVRQA ARAIDRRIFL
MVGAMLGVAA ALDATGGARA IAEASVLVFA GYGVPVILSA FFFATALTTN VLTNNATAVL
FTPIAISTAT QLGVDPLIFV YAVIFAANCS FATPMGYQTN LLVMGPGHYE FRDFVRAGTP
LVILLWLAYS FFAPWYYGL
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