| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2850 |
|---|
| Symbol | |
|---|
| ID | 5455178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3053533 |
|---|
| End bp | 3054423 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640878431 |
|---|
| Product | acyl-CoA thioesterase II |
|---|
| Protein accession | YP_001414114 |
|---|
| Protein GI | 154253290 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1946] Acyl-CoA thioesterase |
|---|
| TIGRFAM ID | [TIGR00189] acyl-CoA thioesterase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.105519 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATT CCCCCGAAGC CGATAAAAAT GCCGTCGAAG ACCTGATCGA ACTTCTCGAC
CTGGAGAGGA TCGAGATGAA TCTGTTCCGC GGCCACAGCC CGGATGTGAG CTGGCAGCGC
GTGTTCGGCG GGCAGGTGAT CGGGCAAGCA CTCGTGGCTG CCTACCGGAC CGTCGAGGAG
CGGGTTTGCC ATTCTCTTCA TGCCTATTTC ATCCGTCCGG GCGATCCGAA AGTACCGATC
GTCTATGAGG TGGACAGGGC GCGCGACGGC AAGAGCTTCA CCACGCGGCG CGTCGTTGCC
ATCCAGCACG GTAAGCAGAT TTTCAACCTG GCGGCCTCTT TCCAGTCGCC CGAGACGGGT
TTCGAGCATC AGAGCACGAT GCCGGACGTG CCGCAGCCGG AAGACCTGCC GAACGAACGG
GAGCTGCGGC GCGCGATTGA ATCGCGCCTC CCCCCCGAAA TCGCGAAGCA CTTCTCCAGA
CCGAGACCCA TTGAGATCCG CCCGGTCAAT CCGCAGGACT ATATCGATCC GGAACCAATG
GAGCCGTTCC AGCATGTCTG GTTTCGCGCG CGCAAAAGCG TCGGCGACGA TGTGGCGTTG
AACCAGTGCA TCGTGGCCTA TGCCTCCGAC ATGACGCTGC TCGACACATG CATCCGGCCC
CACGGCGTAA GCTGGGTGTC GGGAAAGCTG CAGTCTGCCA GCCTCGACCA TGCCATGTGG
TTCCATGCGC CGTTTCGCAG CGATGAGTGG CTGCTCTATA CCCAGGACAG TCCCAGCGCG
TCCGGGGCAC GCGGCTTCAA CCGGGGCAGC CTCTATACGC GGGACGGCAA GCTTGTCGCC
TCTGTGGCGC AGGAAGGGCT TATTCGCTAC CACGGCAAGC CGAAAGCCTG A
|
|---|
| Protein sequence | MTDSPEADKN AVEDLIELLD LERIEMNLFR GHSPDVSWQR VFGGQVIGQA LVAAYRTVEE
RVCHSLHAYF IRPGDPKVPI VYEVDRARDG KSFTTRRVVA IQHGKQIFNL AASFQSPETG
FEHQSTMPDV PQPEDLPNER ELRRAIESRL PPEIAKHFSR PRPIEIRPVN PQDYIDPEPM
EPFQHVWFRA RKSVGDDVAL NQCIVAYASD MTLLDTCIRP HGVSWVSGKL QSASLDHAMW
FHAPFRSDEW LLYTQDSPSA SGARGFNRGS LYTRDGKLVA SVAQEGLIRY HGKPKA
|
|---|
| |