| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2603 |
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| Symbol | |
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| ID | 5455797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2806469 |
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| End bp | 2808526 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640878180 |
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| Product | choline transport protein BetT |
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| Protein accession | YP_001413868 |
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| Protein GI | 154253044 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.158704 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATG TTACGGACGG CGCCGGAACG AAGGACAGAG AAGACCGGAT CAATCCGGCC
GTCTTCTACA CATCCGCCGT CGGCATCGCG CTTTTTGCCA TCTGGACGAT GTTTTTCATC
GATTCCGCGA ATTTCGTCAT CAATTCAGTG CTGGCGTGGA TTTCCGATGT GTTCGGCTGG
TTCTACTTCG TTGCCGTGGT TCTCTATCTG GTTTTTGTGA TCGGCATCGG ACTATCCCGC
TTCGGCAAGG TACGTCTCGG TCCCGACCAT GCCAGGCCGG AATTCAACGC GATCACCTGG
GCGGCAATGC TTTTCGCGGC GGGTATCGGT ATTGATCTCC TCTTCTTCTG CGTCTCCGAA
CCTGTCACGC AGTTCCTTGC GCCTCCCGAG GGCGAGGGCA GCACGGTCGA GGCGGCGCGG
CACGCGATGC AGCTCACCTT TCTCCATTGG GGCTTGTCCG GGTGGGGCGT TTACACGCTG
GTCGGGATGT CGCTTGCCTA TTTCAGCTAT CGGCACGGCC TGCCGCTGAC CATTCGTTCA
GCGCTCTTTC CCATTTTCGG CCAGCGCATC TATGGCGTGA TCGGCCATAC GGTCGATATC
GCCGCCGTTA TCGGGACCGT GTTCGGCATC GCGACGAGCC TCGGCATCGG CATCATCCAG
CTCAACTACG GGCTGGAGCA TATGTTCGGT ATTCCGCAGA GCACCCTTAC CCAAGGCGCC
CTGGTGATCC TGATCATCGT TTTCGCCGCG CTTTCGGCCG CGACGGGTGT GGAGCGGGGT
ATTCGCCGCC TTTCGGAATT CAACATGGCG CTGGCGCTGC TCCTGTTGCT TTTCGTGCTG
TTCGTGGGCG AGACGACCTT CCTGCTCAAT GCGCTGGTGA TGAATATCGG GGATTATCTT
TCCGACTTCG TCAGCCTTTC CTTCAACACC TATGCGTTTG ACCCGCCTGT CGACTGGCTG
AATGCGTGGA CGGTCTTTTT CTGGGCGTGG TGGATTGCAT GGGGACCCTT TGTCGGGCTC
TTTCTTGCCC GCATTTCGCG CGGCCGCACC ATTCGCCAAT TTGTGGCCGG CACGCTGATC
CTGCCGCTCG TCTTCATGAT GGGGTGGATG TCGATCATGG GGAACAGCGC CATCGAACTT
GTGATGTCCG GTGCGACAGA GTTCGGTGAT GAGGCGATGG CCAATCCAGG TTCCGCGATC
TACCTGTTCA TGCAGAGCCT GCCATTAGCC ACGGTTACGA CCATCGTCGT TACGCTTCTC
GGCATCGTCT TTTTCATCAC TTCGGGTGAC TCAGGCTCGC TGGTGCTTTC GAACTTCACG
TCGACCCTCA AGGACGTCAA TTCCGATGCG CCGGTCTGGA TGCGGGTTCT GTGGGCGACC
ATTATCGGCG TGCTGACGCT GGCGCTGCTC CTTGCAGGGG GGCTTGAGGC GCTGCAGAGC
ACGGTCGTCA TCATGGGGCT GCCATTCTCC ATCGTGCTGT TCTTGATGAT GCTGGGCCTC
TTCAGGGCGC TCAGGGTCGA GGGCATGAAG GAAGACAGCC ATCGCGCCAG TCTTTCCGGC
TACCTCTCCG GCAGGATCGG CGCGCCTGCG TCCAACTGGC GGCAGCGGAT TGCGCGGGCG
ACGAGCTTCC CGACGTTGGC GCAGGTACGG CGCTTCATGC GGGACGCCGT GAGGCCGGCG
ATGGAAGAGA TCCGGGAAAC GCTTGAAAAG CGGGGATTTC CGGCCCGGAT CGTCGAGGGC
GAGGGGGACG ATGGCTGCCT GTCGCTCAAT GTCGCAATGG CCGACGACCA GGACTTCACC
TACGAGGTCT GGCCGGTATG CGGCACGATG CCTGCCTTCG CGGTACGGCC GCAACAGACG
GCTTCGGAGT ATTACCGCGC CGAGGTGCAT CTCTTCGAGG GCAGCCAGGG CTACGACCTG
ATGGGCTACA CGAAGGAGCA AGTGATCGAG GACATCCTCG ATCAGTTCGA GCGGCACATG
CATTTCCTTC ATACGCAGCG CGAGGCGCCG GGCGGGGCAA CCCGGATGCC GGACGACAGC
ACCAAGGGGC CGGACTGA
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| Protein sequence | MSDVTDGAGT KDREDRINPA VFYTSAVGIA LFAIWTMFFI DSANFVINSV LAWISDVFGW
FYFVAVVLYL VFVIGIGLSR FGKVRLGPDH ARPEFNAITW AAMLFAAGIG IDLLFFCVSE
PVTQFLAPPE GEGSTVEAAR HAMQLTFLHW GLSGWGVYTL VGMSLAYFSY RHGLPLTIRS
ALFPIFGQRI YGVIGHTVDI AAVIGTVFGI ATSLGIGIIQ LNYGLEHMFG IPQSTLTQGA
LVILIIVFAA LSAATGVERG IRRLSEFNMA LALLLLLFVL FVGETTFLLN ALVMNIGDYL
SDFVSLSFNT YAFDPPVDWL NAWTVFFWAW WIAWGPFVGL FLARISRGRT IRQFVAGTLI
LPLVFMMGWM SIMGNSAIEL VMSGATEFGD EAMANPGSAI YLFMQSLPLA TVTTIVVTLL
GIVFFITSGD SGSLVLSNFT STLKDVNSDA PVWMRVLWAT IIGVLTLALL LAGGLEALQS
TVVIMGLPFS IVLFLMMLGL FRALRVEGMK EDSHRASLSG YLSGRIGAPA SNWRQRIARA
TSFPTLAQVR RFMRDAVRPA MEEIRETLEK RGFPARIVEG EGDDGCLSLN VAMADDQDFT
YEVWPVCGTM PAFAVRPQQT ASEYYRAEVH LFEGSQGYDL MGYTKEQVIE DILDQFERHM
HFLHTQREAP GGATRMPDDS TKGPD
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