| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2437 |
|---|
| Symbol | |
|---|
| ID | 5456094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2637686 |
|---|
| End bp | 2639575 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640878013 |
|---|
| Product | chloride channel core |
|---|
| Protein accession | YP_001413703 |
|---|
| Protein GI | 154252879 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0038] Chloride channel protein EriC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.276438 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.470563 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAGCG GCAGGCGGCT TCGCCATGCG GCGGAAGCGC CGCAGATGCC GCGCGTCGGG
CTGGTCATAC TGCCTAACAT ATTGGAGTAT CAAGGAAAAG AAGGGCAGGG CGGGGTGCGC
GAGGCGGAAG ATACCAGACA GGTCAATATG GTCGTCCTCT CCCTGCTGGC GCTCGCCGTT
GGCCTCGCCA CGGGTGTCGG CGCGGTGATT TTCCGTTCCA TGCTGGTGGG GCTCCATAAT
CTCTTCTTTT TCGGTCAGCT TTCGCTCACG CCGACATCGG GCGCAACGGG GCCGCTCAGC
CCGCTTGGCG CCCTCATCAT TCTCGTGCCC GTCCTTGGCG GCATCGCGGT CGTCTGGATT
ACGCGGCGTT TCGCGCCGGA GGCGAAAGGC GGCGGCATCA CCGATGTCAT GGACGCGGTC
TATCACCGCG AAGGGAAAAT CCGCCCGCGC GTCGCGGTGG TGAAGACCAT CGCCTCGGCG
CTTTCCATCG GCTCAGGCGC AACGGTCGGG CGCGAAGGGC CCATCGTGCA GATCGGCTCG
GCCATCGGCT CCGCCATCGC ACAGTTCTCC CGTCTCCCGT CATGGCAGCG GATTACGCTG
CTCGCGGCAG GCGCCTCGGC CGGCATTTCG GCCACCTTCA ACACCCCGCT CGGCGCGGTT
CTCTTCGCGC TCGAATTGAT CCTTCCCGAG ATCAGCGCGC GCACCTTTCT TCCCGTCGTC
ATCGCGACGG GCTCGGCCAC CTATGTCGGC CGCGTCGTCT TCGGTTCGTA CCCCGCCTTC
GTGCTGCCCC AGATGTCGTT TGCGACGTCG GAGATGGACC ACATTTTCAA TCTCGGTGCC
TTCGTCGTGC TCGGGCTCAT GTCCGGCCTC GTCGCATGGG GCTTCCTGCG CACGCTTCTC
TTCGCGGGCG ATGTCATGCC GCGCCGCTTT CCGAATGAAT ATATGCGCGC GGCGGCAGGC
TTCACCGGCA TCGGCATCGC GCTCTTCCTG TTCGCGCATT TCACCGGCCA TTACTACATT
ATCGGCGGCG GCTACGATGC CATCGCCGCC ATTCTCGAAG GCCATGTAAC GTCCTTCCTG
CTGCTCGCCG CCCTCTGCGT GGCGCAGGTC TTCGCCACTT CTCTCAGTAT CGGCTCCGGC
GCGTCTGGCG GCGTTTTCGC GCCCATGCTT TTCATCGGCG CCTCGCTCGG CGGTGCCTTC
GGCGCCTTGC TGCATATCTT CGACGCGGAT CACGGCATCG GGGTCGCCGA CTACGCCATC
ATCGGCATGG CGGCTGTCGT TGGCGGCGGC ACGGGCGCGG CGATGACAGC GATCACCATG
AATTTCGAGA TGACGCGCGA CTACAACATC ATCGTGCCGC TCATCATCGC GGTTGCCGTC
TCCATCGGCA TGCGACGTGC GCTCACACGG GACAATATTT TCAGTGCGGA GCTGGTGCGG
CGCGGGCGGC CGGTGCCGAA AGACCGCTAT TCAAATCTCT ATCTCGTCCT CAGCGCCCGC
GAGGTGATGG ATGCGAATAT CTCGGTCATG TCGGCGGAGC TGGCGGTGGA AGAGGCCGCG
CAATGGGCGG CGGAAGGAGG CATGCCGAAT TTCATCGTGC TCCAGCAGCA GGGCCGCATT
CAGGGTGTCG TCTCCTTCGA CAGCCGCATT CGCGTGCCGG AACTCTTCGG CAGGGATGTC
GAAACGCTCT CCGACATGGC GATCCAGGAC TACATTCTCG TGCGTGAGAA CAACATCCTT
GAAGAGGTCA TGCGGCGCCT TGGAGAAAAG GATGCGAAGC TCGCCCTGGT CGTGAAAGAC
AAACCCGGCA TCCCCCGCGC CGCCGACGTC CTCGGCGTGA TCGGCAAGCC GCAGATCGCG
GACGCGATTA TCGGAACGCA GATCGGGTAG
|
|---|
| Protein sequence | MGSGRRLRHA AEAPQMPRVG LVILPNILEY QGKEGQGGVR EAEDTRQVNM VVLSLLALAV
GLATGVGAVI FRSMLVGLHN LFFFGQLSLT PTSGATGPLS PLGALIILVP VLGGIAVVWI
TRRFAPEAKG GGITDVMDAV YHREGKIRPR VAVVKTIASA LSIGSGATVG REGPIVQIGS
AIGSAIAQFS RLPSWQRITL LAAGASAGIS ATFNTPLGAV LFALELILPE ISARTFLPVV
IATGSATYVG RVVFGSYPAF VLPQMSFATS EMDHIFNLGA FVVLGLMSGL VAWGFLRTLL
FAGDVMPRRF PNEYMRAAAG FTGIGIALFL FAHFTGHYYI IGGGYDAIAA ILEGHVTSFL
LLAALCVAQV FATSLSIGSG ASGGVFAPML FIGASLGGAF GALLHIFDAD HGIGVADYAI
IGMAAVVGGG TGAAMTAITM NFEMTRDYNI IVPLIIAVAV SIGMRRALTR DNIFSAELVR
RGRPVPKDRY SNLYLVLSAR EVMDANISVM SAELAVEEAA QWAAEGGMPN FIVLQQQGRI
QGVVSFDSRI RVPELFGRDV ETLSDMAIQD YILVRENNIL EEVMRRLGEK DAKLALVVKD
KPGIPRAADV LGVIGKPQIA DAIIGTQIG
|
|---|
| |