| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2419 |
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| Symbol | murD |
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| ID | 5455424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2611487 |
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| End bp | 2612890 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640877995 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001413685 |
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| Protein GI | 154252861 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00927705 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.776688 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCGG CGACCGGATT CGAAAAGCGT AACGTGGCGG TGCTGGGACT CGGCAAGTCC
GGGATGGCGA CCGTGCGCGC GCTCGAGGCC GGCGGCGCGA ACGTCTTTGC GTGGGACGAT
GCGGGCGAGA AGCGCGCGGA AGCGGCGAAG GCGGGGTTCA CGCTTTCGGA TGCGAGCGGC
TGGGACTGGA AGACCTTCGC GGCGCTGGTG CTGAGCCCCG GCATTCCACT GACGCATCCG
GAGCCGCATC CGGCGGTGCT GACCGCGAAG GCGGCGGGCG TCGAGGTGAT CGGCGACATC
GAACTTTTCC AGCGTGCGGT GACGGGTACG GGCGCGAAGG TCGTCGCGAT CACGGGTACC
AATGGAAAGT CGACGACAAC GGCGCTGATC GGTCACATGG TGCGGCGCTG CGGCGGCGAC
GCGCAGGTGG GCGGCAATAT CGGCAAGGCG GTGCTGGAGC TCGAAGCGCC CTCCGCGAGC
AGCGTTTATG TGGTGGAAGT ATCGTCCTAC CAGATCGACC TCGCGCCGAG CCTTGCGCCG
CATATCGCGG TGCTGCTCAA TATCACGCCG GACCATATCG ACCGGCATGG CACGGTGGAG
CATTATGCGG ATGTGAAGGC GCGCATCTTC GCGCGGCAGA CGGCGGCGGA TACGGCCGTC
ATCGGCATCG ACGAGCGGCG GTCGAGCGAC ATCTGCACGC GGGAAAGCGC CCGTCGGGTG
GAGAAGGTTG TGCCGGTGTC GGTCGGCAAG GCGCTGTCGC GCGGCGTTTA TGCGCTGGAC
GGCGTGCTTT ACGACAGCAC GGGCACGCAG ACGGCGAAGG CGGGCGACCT GCGGACGATC
AAGACGCTGG CGGGTGCGCA TAACTGGCAG AACGCGGCGG CGGCTTATGC GGCGGGCCGC
GCGCTCGGCT ATCAGCGCGA GCGGATTTTC GCGGCATTCG AGAGTTTCCC GGGCCTCGCG
CACCGGATGG AGATCGTCGC CGAGGCGGAG GGCGTGCGCT TCGTCAATGA CAGCAAGGCG
ACCAATGCGG ATGCGGCATC GAAGGCGCTC GGCACATATG ACAACATCTA CTGGATCGCG
GGTGGCAAGG CGAAGGAGGG CGGCATCGAA AGTCTCGAGC CCTGGTTCCC TCGCATCCGC
AGGGCCTATC TGATCGGCGA TGCGGCGAAG AGCTTCGGCG AGACGCTGAA GGGAAAAGTG
GAAGCCGTGC AGTGCGGCAC GCTCGACCGC GCCGTCGAGG CCGCGACGCG CGATGCGCGC
GCCGATGCGA GCGACCTCAA GGTGGTGCTG CTTTCTCCGG CCTGTGCCTC GTTCGATCAG
TTCGCAAATT TCGAGCAGCG CGGAGATGCT TTCCGCGCCG CCGTGCAGGA GCGGGTCGCG
ACCATGGGGG GTGCCGCCGC ATGA
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| Protein sequence | MIAATGFEKR NVAVLGLGKS GMATVRALEA GGANVFAWDD AGEKRAEAAK AGFTLSDASG
WDWKTFAALV LSPGIPLTHP EPHPAVLTAK AAGVEVIGDI ELFQRAVTGT GAKVVAITGT
NGKSTTTALI GHMVRRCGGD AQVGGNIGKA VLELEAPSAS SVYVVEVSSY QIDLAPSLAP
HIAVLLNITP DHIDRHGTVE HYADVKARIF ARQTAADTAV IGIDERRSSD ICTRESARRV
EKVVPVSVGK ALSRGVYALD GVLYDSTGTQ TAKAGDLRTI KTLAGAHNWQ NAAAAYAAGR
ALGYQRERIF AAFESFPGLA HRMEIVAEAE GVRFVNDSKA TNADAASKAL GTYDNIYWIA
GGKAKEGGIE SLEPWFPRIR RAYLIGDAAK SFGETLKGKV EAVQCGTLDR AVEAATRDAR
ADASDLKVVL LSPACASFDQ FANFEQRGDA FRAAVQERVA TMGGAAA
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