| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2354 |
|---|
| Symbol | |
|---|
| ID | 5455064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 2539878 |
|---|
| End bp | 2540798 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640877932 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001413623 |
|---|
| Protein GI | 154252799 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.186414 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGC ATCTGAGCTA CGTCCCCCAA AAAAGCGGAG CAGAGTTCGA GGAACTGGTC
CCGTCGCGCT ACGCGCTGCG GATCGGTGAA ATCGACGTGC TGGTGGTGAG CGACGGGGTC
CTTCCGCTGC CGACCGAAAC GATGGCCACC AATGTGGCCC CTGCCGTCCG CGCCGCCTGG
TTCAAGGACA TGTTTCTGGG ACCCGACATG TTCGACTGGG CGCTGAACGT CCTGGTCGTG
CGAAGCGGCG ACAAGACCAT CCTCATCGAT GCTGGTCTGG GAGGGCAATT CCCCGGCTTT
CCGCGGGCCG GGTTATTTCC GAAGCGGCTG GAGGCGGCCG GCATCGACCT CGCATCGGTG
ACCGACATTA TCGTCACCCA TATGCACATG GACCATGTCG GCGGACTGCT CGTCGACGAC
GTGAAGAAGC GGCTGCGTCC GGATGTGCGG ATTCACGTTT CGGCCACCGA GGTCGACTTC
TGGGGGACGC CCAATTTCTC CCAGACTGCG ATGCCGACGC CGGTTCCCGA CGTTCTCAGG
ACCACTGCCA CGGAGTTCTT GAAGGTATAT GGTGCCAATC TGCAGACCTT CGCCGAAGAG
CGCGAGGTGG CACCGGGAGT GGTCGCCAGG CTTACCGGCG GCCACACGCC GGGACATAGC
GTCGTCCATG TGACGTCCGG CGGCGAGCGG CTGACATTCG CCGGAGATGC CCTGTTCCCG
GTCGGCTTCG ATCACCCCGA CTGGCACAAT GGCTTCGAAC ATGACCCGGA AGAGTCGGTT
CGCGTCAGAG TCCGCCTGTT GCAGGAAGCA GCGGCCACGG GAGAACTCCT CGTGGCTACC
CACTTGTCCT TCCCATCCGT CGGCAGGGTT GCGCTGGATG GCGAGGCCTT CCGTTGGGTA
GCGGCCTCCT GGGACTTCTG A
|
|---|
| Protein sequence | MTTHLSYVPQ KSGAEFEELV PSRYALRIGE IDVLVVSDGV LPLPTETMAT NVAPAVRAAW
FKDMFLGPDM FDWALNVLVV RSGDKTILID AGLGGQFPGF PRAGLFPKRL EAAGIDLASV
TDIIVTHMHM DHVGGLLVDD VKKRLRPDVR IHVSATEVDF WGTPNFSQTA MPTPVPDVLR
TTATEFLKVY GANLQTFAEE REVAPGVVAR LTGGHTPGHS VVHVTSGGER LTFAGDALFP
VGFDHPDWHN GFEHDPEESV RVRVRLLQEA AATGELLVAT HLSFPSVGRV ALDGEAFRWV
AASWDF
|
|---|
| |