Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2083 |
Symbol | |
ID | 5454407 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 2266279 |
End bp | 2267907 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640877660 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_001413354 |
Protein GI | 154252530 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.656252 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0000000000010579 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGACGA ACCCCTATGA AACCGACCTC GACCGGAATG CGGCGAACCA TCAGCCGTTG ACGCCGATGA GTTTCCTGAA GCGGGCGGCG GAGGTTTATC CGGGGAAGCT CGCCGTGGTG CATGGGAGCA TCCGCCGCGA CTATGCGGAG TTTTATGCGC GCTGCCGGAA GCTCGCCTCG GCGCTCAGCG AGCGGGGCAT CGGGCTTGGC GACACGGTGG CGGTGATCGC GCCGAACATT CCGGCAATGC TGGAACTGCA TTATGCCGTG CCGATGATCG GCGCGGTGCT GAATACCATG AACATCCGCC TCGACGGCGC CATCATCGGC TTCATGCTGG ATCATGGCGA GGCGAAGGCG CTGTTCGTCG ACCGCGAATT TTCCGCGCTC GGCAAGGAGG CGCTTTCCAA GGCGAAGGTG AAGCCCTTCG TGATCGACAT CGACGACGCG GAATATGACG GGCCGGGCGA CAGGATCGGC GAGGCGGAAT ATGAGGATTT TCTCGCACAA GGCGATGCGA AATTCGACTG GTCGCTGCCC GCCGACGAGT GGCAGGCGAT CAGCCTCAAT TATACGTCGG GCACGACCGG CAATCCGAAA GGCGTCGTCT TCCATCATCG CGGCGCCTAT CTGCTGGCGA TGGGCAATAT CGTGACGGCG GGCATGACCG GCAATTCCGT CTATCTCTGG ACGGTGCCGA TGTTCCATTG CAACGGCTGG TGCTTCACCT GGTCGATGAG CGTCATCGCG GGCACGCATG TGTGCCTGAG GCGCGTGACG GCGGCGAACA TCTTCAGCGC CATCGCGGAA CATGGCGTGA CGCATATGGC GGGCGCGCCG ACCGTGATGA GCTTTCTCAT CAATGCGACG GAGGAGGAGA AGAAACCGCT GCCGCACACG GTTTCCTATT TCGCCGCCGC CGCGCCGCCG CCCGCCGCGA CCATCCGCAA GCTCGAGGCG GAAGGCTTCA ACGTGATCCA TGTCTATGGC CTCACCGAAA CCTACGGCCC CGCAGTGGTG AACGCCTGGC ACGACGAATG GGACGAGCTG GAAGTGAATG CGCGGGCGCA GGTGAAGGCG CGGCAGGGCG TGAACTATCC CGTGCTCGAA GGGATTTCCG TGCGCGACCC GGAGACGATG GAGGAAGTGC CGCGCGACGG CGAGACCATG GGCGAGGTCA TGTTCCGCGG CAATGTGGTG ATGAAGGGCT ACCTCAAAAA CCCGAAGGCG AGCGCGGAAG CCTTTGCCGG CGGCTGGTTC CACTCGGGCG ATCTCGGCGT CTGGCATCCC GACAATTATA TTCAGCTCAA GGACCGCTCG AAGGACATCA TCATTTCCGG CGGCGAGAAC ATCTCCTCTC TCGAAGTCGA GGACGTGCTC TACAAGCATC CCGACATCAT CGAGGCGGCT GTCGTCGCGC GGCCGGATGA GAAATGGGGC GAGACGCCCT GCGCCTTCAT CACGCTCCGC AAGGGCGCTT CGCTCACCGA AAAGGACGTG ATCGCCTATT GCCGCGAACA CCTGGCGCAT TTCAAATGCC CGAAGACGGT GGTTTTCACC GACCTGCCGA AAACCTCCAC GGGCAAGGTG CAGAAATTCA AGCTCAGGGA GCAGGCGGGG GAGCTTTAG
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Protein sequence | MTTNPYETDL DRNAANHQPL TPMSFLKRAA EVYPGKLAVV HGSIRRDYAE FYARCRKLAS ALSERGIGLG DTVAVIAPNI PAMLELHYAV PMIGAVLNTM NIRLDGAIIG FMLDHGEAKA LFVDREFSAL GKEALSKAKV KPFVIDIDDA EYDGPGDRIG EAEYEDFLAQ GDAKFDWSLP ADEWQAISLN YTSGTTGNPK GVVFHHRGAY LLAMGNIVTA GMTGNSVYLW TVPMFHCNGW CFTWSMSVIA GTHVCLRRVT AANIFSAIAE HGVTHMAGAP TVMSFLINAT EEEKKPLPHT VSYFAAAAPP PAATIRKLEA EGFNVIHVYG LTETYGPAVV NAWHDEWDEL EVNARAQVKA RQGVNYPVLE GISVRDPETM EEVPRDGETM GEVMFRGNVV MKGYLKNPKA SAEAFAGGWF HSGDLGVWHP DNYIQLKDRS KDIIISGGEN ISSLEVEDVL YKHPDIIEAA VVARPDEKWG ETPCAFITLR KGASLTEKDV IAYCREHLAH FKCPKTVVFT DLPKTSTGKV QKFKLREQAG EL
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