Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1999 |
Symbol | |
ID | 5454282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2183360 |
End bp | 2184532 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640877576 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001413270 |
Protein GI | 154252446 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.00132105 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 87 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCCGCC ACCACAGGTG GAACAAAGCC CCGAGAGCGA CATTCATGCA GTCTTTGAGA GAGCTTCCTC CGCGTACACT GATCATTGGT GCATTGGCCG CGCTTGTGGT GCTTGGTTTT ATCTACCTGG TCTATGCACG CCTTTCCGGG CAGCAGGGGC AGCAGGCCTT CCCGCCGCCG GTGGTCGAGG TCGTGGAGGC TCCGCAGCAG CCGGTTCAGG TGAAGGTCTC TGCTCTCGGG ACGCTTCAGG CCGATCAGGC GATCACGATC AGACCCGAGA TAAACGGCAT CGTTACCAGC ATCGATTTCG TCGACGGTCA GCGGATGGAT ACGGGCGATC TCGTCATCAC CATAAATGAT GAGGATCTGA AGGCGCGGTT GATGCAGGCG GAGGCCCGTC TCACCCTCAC TCGTGCGAAC TATCAGCGTG CCGAGCAGCT GGTCAAACAG GGGTCGGGCA CGGCGCGAGC CCGCGATGAA GCGCTCAATG ATTTCAAATC GGCGGAAGCA GAAGTCGCGG CCGCCAAAAC GGCTCTCGAC AAGGCGACGA TCACGGCGCC GTTTCCGGGC ATCATCGGTT TACGGCAGGT GAGCCTCGGG CAGTATCTGA CCGCGGGAGA GCCTATTGCG ACGCTCGCCG ACGTGGACAA TCTGAGGATC GACTTCAGCG TGTCCGAGGT GTTCCTCACG CATGTTCGCA AGGGGCAGGA CGTGCGGGTT CTGTTCGATG CGCTGCCGGG CAACGCTTAT AGAGGTGTCA TCAGCGCCGT CGACCCTGTT GTCAGCACCG AAGGTCGTGC ATTGAGCGCG CGTGCGGTGT TGCCCAATGA GGAGGGAGCT CTGCGACCCG GTATCTTCGG CCGCGTCGAG ATCGTGACGG AAACAAGGAC CTCGATCGTA CTGCCGGAGG CCGCAATCGT CGCGTCACCG ACCGGAGCAA AGGCAGTGTT CGTGGTCGTA GACAGCCACG CGCAAATGAA AGAAGTCACC ATCGGTGAAA GGCTTCCGGG CAGTGTTGAA ATCCTCTCCG GGCTGGAGGC TGGCGAGGTG GTTATCGTCG CCGGTCAGCT CAAGGTGAGA GATGGAGCGC CCGTCGAACC GACGCCCGCG ACGGAGACGG GTGTTTCGCC CGCCGGCGAT CCCGGCGCGG CCAATGCCCC CCGGGGCGAG TAA
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Protein sequence | MGRHHRWNKA PRATFMQSLR ELPPRTLIIG ALAALVVLGF IYLVYARLSG QQGQQAFPPP VVEVVEAPQQ PVQVKVSALG TLQADQAITI RPEINGIVTS IDFVDGQRMD TGDLVITIND EDLKARLMQA EARLTLTRAN YQRAEQLVKQ GSGTARARDE ALNDFKSAEA EVAAAKTALD KATITAPFPG IIGLRQVSLG QYLTAGEPIA TLADVDNLRI DFSVSEVFLT HVRKGQDVRV LFDALPGNAY RGVISAVDPV VSTEGRALSA RAVLPNEEGA LRPGIFGRVE IVTETRTSIV LPEAAIVASP TGAKAVFVVV DSHAQMKEVT IGERLPGSVE ILSGLEAGEV VIVAGQLKVR DGAPVEPTPA TETGVSPAGD PGAANAPRGE
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