Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1943 |
Symbol | |
ID | 5454386 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 2119000 |
End bp | 2119743 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640877520 |
Product | 20S proteasome A and B subunits |
Protein accession | YP_001413215 |
Protein GI | 154252391 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3484] Predicted proteasome-type protease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.65129 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTATT GTGTGGCCCT TCGGCTCAAG GACGGGCTGG TGATGCTGGC GGACACGCGC ACCAATGCCG GCGTCGACAA CATCTCCACC TTCCGCAAGC TCTCCACGAT CGAACATCCC GGCGAGCGCG TCATCGGCAT CATGACGGCG GGCAATCTCG CGGTCAGCCA GGCCGCCGTC AACATGGCGG TGGAGCAGGG CGTGCGGGTG CGCGACGGCG ACGAACTGGA AACGCTGCAC ACCGTGCCCA CCATGGTCCG CGCCGCCCAG CTCATGGGCC AGGCCGTGCG CGAGGTCTAT CGCATCGACG GTCCCTCTCT CGAGGCGCAG GCGGGCGATT TCAATGTCTC GATCCTGATG GGCGGCCAGG TCGGCAATGG CGAGATGCGC CTCTTCCAGG TCTATTCGGC GGGCAACTAT ATCGAGGCGA CGGAAGACAC GCCCTATCTT CAGATCGGCG AGCACAAATA TGGCAAGCCC ATCATCGACC GCGCGCTCAG CTACGACACT GCGCTGGGAG ATGGGCTCAA GCTCGCGCTG ATCTCCATGG ATTCGACCAT GCGCTCCAAC CTCTCGGTCG GCATGCCGAT CGATCTCATG GTCTATCGCC GCAACGCCCT CAAGGTCGCG ATGCAGCGGC GCATCAAGGA TGACGATGCC TATTTCACCG GCCTCCGCCA TTCCTGGTCC GATGCGCTGA CGCAAGCCTA TCGGGCAATC CCGGGCCCCG GCTGGGAATT CTGA
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Protein sequence | MTYCVALRLK DGLVMLADTR TNAGVDNIST FRKLSTIEHP GERVIGIMTA GNLAVSQAAV NMAVEQGVRV RDGDELETLH TVPTMVRAAQ LMGQAVREVY RIDGPSLEAQ AGDFNVSILM GGQVGNGEMR LFQVYSAGNY IEATEDTPYL QIGEHKYGKP IIDRALSYDT ALGDGLKLAL ISMDSTMRSN LSVGMPIDLM VYRRNALKVA MQRRIKDDDA YFTGLRHSWS DALTQAYRAI PGPGWEF
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