| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1835 |
|---|
| Symbol | |
|---|
| ID | 5453499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1986740 |
|---|
| End bp | 1987717 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640877414 |
|---|
| Product | P-type conjugative transfer ATPase TrbB |
|---|
| Protein accession | YP_001413109 |
|---|
| Protein GI | 154252285 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGTC CCGCCGAAGC GCAAGCGAGG GAACGGCGCC GTTCGATGCT CCGGACCGCC
ATGGGACCGG CGATCGCGGC GGCGCTCGCC GATCCCTCGG TCGTCGAGGT GATGGTCAAT
CCGGACGGGA GCCTCCGGCT TGACCGGCTG GGCGAGGGCA GGGTCGACAC CGGCGTGCGC
TTCGAGGCGG CCGAGGTCGA ACGCGTGATC CGGCTTGTGG CCTCGCATGT TCGCACCGAA
GTCCATGCCG GCAACCCGGT CGTGAGCGCT GAGCTTCCCG AAAGCGGCGA ACGCTTCGAA
GGCCTGCTGC CGCCCGTCGC GCCCGCACCC TGTTTCGCGA TCCGCAAACC CGCCGCACGG
ATTCATACGC TGGAGGACTA TATCGCCGAC CGCATCCTCT CGCCCGAGCA GGCAAGCGCT
TTACGCGATG CCGTCGCCGA CCGGCGCAAT CTTCTGATCG CGGGCGGTAC GAGTTCGGGC
AAGACGACGC TCGCGAACGC GCTGCTTGCC GAAATGGCGA CGGCCGACGA GCGCATCATC
CTGATCGAGG ATACGCGCGA GTTGCAATGC GCGGCGCCCG ATTGCGTGGC GCTCCGCACG
AAGCCGGGCG TGGTCTCGCT GGCCGATCTC GTCCGCTCGA CGCTTCGCCT CCGGCCCGAC
CGCATCATTG TCGGCGAAGT GAGAGGCGGT GAGGCACTCG ACATGCTGAA GGCCTGGAAC
ACAGGCCATC CGGGCGGCAT CGCGACGCTG CATGCGAACT CCGCCCGCGC CGCCCTCTAC
CGGCTCGAAC AGCTCGTCCA GGAGGCGAGC GCCGTCGTGC CGCGCCGTCT CATCGCCGAA
GCGATCGATC TCGTCGCCTT CATCGAGGGA AGAGGGGCGG CCCGCCATGT CGGCTGCATC
GCCCAAGTGA CCGGCCTCGA CACCAATGGC GACTATCTCG TCACTGAGAC CACGAGCCCG
CATCGCCCCT CTGTCTGA
|
|---|
| Protein sequence | MSGPAEAQAR ERRRSMLRTA MGPAIAAALA DPSVVEVMVN PDGSLRLDRL GEGRVDTGVR
FEAAEVERVI RLVASHVRTE VHAGNPVVSA ELPESGERFE GLLPPVAPAP CFAIRKPAAR
IHTLEDYIAD RILSPEQASA LRDAVADRRN LLIAGGTSSG KTTLANALLA EMATADERII
LIEDTRELQC AAPDCVALRT KPGVVSLADL VRSTLRLRPD RIIVGEVRGG EALDMLKAWN
TGHPGGIATL HANSARAALY RLEQLVQEAS AVVPRRLIAE AIDLVAFIEG RGAARHVGCI
AQVTGLDTNG DYLVTETTSP HRPSV
|
|---|
| |