| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1769 |
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| Symbol | |
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| ID | 5456694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1921911 |
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| End bp | 1922672 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640877350 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001413045 |
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| Protein GI | 154252221 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.145372 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAGGAC TCGATCAGAA GCCGGTCATC GTTACCGGCG GCGCAAGCGG TATCGGAAAG
GCGATTGGGC TCAGGCTTGG CGAAGAGGGT GCCAGGGTCG CCATTTTCGA CATGAACGAG
AAGGGTGCCG AGGCCGCCGC CGCCGAAATT CGCCAGAAGG GTGGAGAGGC TTGGGCCTAT
AAGGTCGACA TCACCGACTA TGCGGCAGTG GCGCGGGCAG TCGATGCGTT CGAAAAGGCG
GCCGGCCAGG TTTATGGACT GGTGAACAAT GCCGGTTGGG ACGAGGCGAA GCCTTTTATC
CAGACAGAGC CTGATTTCTG GAAAAAGGTG ATCGACATCA ATCTTTACGG GCCGCTCAAT
CTCACTCATG TCGTTGCGCG TCGGCTTGCC GAGCAGGGTG CCGGTCGGGT CGTCAGCATT
TCGTCGGATG CGGGCCGTGT GGGCTCGTCT GGCGAGGCCG TCTATTCCGC GGCCAAGGGC
GGCGTCATCG CCTTCATGAA GACGATGGCG CGCGAGTTCG CCCGGAAGGG CGTCACCTTC
AATACGATCT GTCCGGGGCC GACGGACACG CCGCTGCTCG CCTCCGTGGA TGCGTCGGGC
GGCGGACGTC TGACCGAAGC GCTCACCAAG GCGATCCCGA TGCGCCGCCT GGCGCAACCG
GACGATTATC CGGGCATGGT CGCATTCTTT CTGAGCGACG ATGCAAGTTT CATTACCGGC
CAGACGATCA GCGTCTCGGG CGGTCTCTCA ATGCACGGTT GA
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| Protein sequence | MRGLDQKPVI VTGGASGIGK AIGLRLGEEG ARVAIFDMNE KGAEAAAAEI RQKGGEAWAY
KVDITDYAAV ARAVDAFEKA AGQVYGLVNN AGWDEAKPFI QTEPDFWKKV IDINLYGPLN
LTHVVARRLA EQGAGRVVSI SSDAGRVGSS GEAVYSAAKG GVIAFMKTMA REFARKGVTF
NTICPGPTDT PLLASVDASG GGRLTEALTK AIPMRRLAQP DDYPGMVAFF LSDDASFITG
QTISVSGGLS MHG
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